Plant FIBer expression Database

Potri.017G068000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13990 639 / 0 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
AT5G13150 563 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1)
AT1G72470 348 / 2e-110 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
AT5G58430 345 / 2e-109 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1)
AT3G14090 332 / 3e-104 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
AT1G54090 325 / 1e-101 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1)
AT5G50380 324 / 1e-100 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1)
AT1G07000 294 / 3e-90 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1)
AT5G03540 282 / 3e-85 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3)
AT3G29400 279 / 4e-84 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G325600
[exp]
1155 / 0 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Potri.001G060700
[exp]
612 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Potri.001G166400
[exp]
358 / 3e-114 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Potri.003G068700
[exp]
346 / 1e-109 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Potri.012G097100
[exp]
344 / 1e-108 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Potri.015G094800
[exp]
341 / 2e-107 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Potri.013G152900
[exp]
321 / 4e-100 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Potri.019G124000
[exp]
315 / 6e-98 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Potri.008G017800
[exp]
294 / 7e-90 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041536
[exp]
716 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Lus10012555
[exp]
701 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Lus10015757
[exp]
508 / 1e-171 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Lus10011334
[exp]
481 / 8e-162 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Lus10003142
[exp]
474 / 3e-159 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Lus10008126
[exp]
359 / 3e-114 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Lus10013163
[exp]
352 / 4e-114 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Lus10037048
[exp]
345 / 4e-107 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1)
Lus10022459
[exp]
326 / 2e-102 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Lus10016764
[exp]
326 / 2e-101 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF03081 Exo70 Exo70 exocyst complex subunit
Representative CDS sequence
>Potri.017G068000.1 pacid=42814642 polypeptide=Potri.017G068000.1.p locus=Potri.017G068000 ID=Potri.017G068000.1.v4.1 annot-version=v4.1
ATGGAAAAAGAACTGTCTGAAAAACATCCACCTGAGAAACAGCTCTCTAATAATTCAGACAGTTATGTCAACAAAGAAAATGGCACCAATATTATTACCA
ATCTCAATGCCAATCACGATGATCACCCTGAAACTGAAACCTGTGATCTGCTGGTGTCCCAGTCACCTAAAACAGAGGTTAAAGTGGAAGAATCAGACAA
CATAAGTCATGAGATTGAGGAAGTTCATCAAGAGGAGAAAGAAAGTGATGAAAAAATTGAAGACAGCCCTCCTACTCCTCCAGAAATTAATTATACCATT
GAAACTGTCTCTCTAGATATTGATCAGTTTCTTATAACATTGTCATCCACTCCAAAAGATGCAATAGAGACAATTGATGGAGAATCAAAAGAAGAGAAAG
ATGGGAAGGTTTCCATAGAGATTCCTGTGTTTGTTGAAAAAATTTTAGATCTTGTTGAAGAAAAGGTGGCAAATCATGACTTGAATGAAGGGAAAAGGAA
GTGGGGTCAAAATCCTGAGGAGGATTCATCTTTTCTTGAAGGTATAAATCGAATTTCCAAGCTAACATCTTCCATTGATAAATTGAGACCCGATCCAAAT
CCTGCAGCATTGATCAACCGCATTGGAGGAATTCAGCAACAAGCAATGACATGCTTGGAGAATGAATTCAAGGTCATTCTTGAAGATATTAAACACAGTG
ATCAAGATCCTACTAATGATGCAAAAGGGAAACAACATGAAGCTGATCACAGCGTAGTGCAGGAATCTGAATCAATAGAAACTGACAACGTTTTAGGATA
TTCTGATTATGCTGTTTCCATTTTGAATAGAATTGCGAAGGCTATGATTGAAGGAGGATTTGAATCTGAATGTTGCCAACTGTACATGATGATTAGGGGG
CAAGCATTTGATGAGTGTTTCATTGAGACAGGATTTGAGAAGATCAGCATTGATGAGGTGCAAAGGATGCCATGGGAAGCATTGGAGAGAGAGATCCCTA
TATGGATCAAGGCCGTCAAGGAATGTGCAAGCATTTACTTCGTGGAAGAGCTAAAGCTCGCCGAGGCCATTTTCTCCGATTATTCCTCGATCTCCTCTAA
CCTTTTTAGCAATCTTATACGCACTGTGATGATCCAGCTTCTCAATTTTGCTGAAGGAGTTGCAATGACAAAGCGCTCGGCAGAAAAGTTATTCAAGTTT
CTTGACATGTACGAAACTTTGCGCGACAGTCTTCCAGCCATGGGGGCTTTGTTTTCGGAGGAATATGAAAATGAGCTTAAAACAGAGACAACGACAGCTC
GGTGTCGGATTGGAGAGGCTGCCATCTATATATTTTGTGATTTGGAGAATTCAATCAAGTCTGATACAGGAAAAACTCCAGTGCCTGGTGGTGCAGTACA
CCCGTTGACTCGCTACACGATGAATTATTTGAAGTATGGAGGTGAATACAAGGCAACTCTTGAGCAACTCTTTCGAGAACATTCAAAGATCGAACGAGCT
GATTCAACAAGTAGACCACGTTTCGAAGGCGAGACTCAAAACTCCAACAATGACATCGCTGAAGAAAATCAGTCTCCATTTTCAAATCAATTGATGAGAG
TTATGGATTTATTAGACTCAAATTTGGGGGCCAATTCGAAGCTTTATAAGGATATTGCGTTGAGCTGTATTTTCATGATGAATAACGGACGGTACATTGT
GCAAAAGATCAAAGGATCCACAGAGATCCATCAAATGATAGGAGATACATGGTGCCGCAGGAAGTCTTCGGAGCTCAGGAACTATCATAAGAATTATCAA
AGAGAGACGTGGAGCAAACTCCTCAGTTGTTTAGGCCACGAGGGACTGCAAGTGAATGGAAAAGTAATTAAGCCAGTGTTGAAAGAGAGGTTCAAGAGCT
TCAACATGTTATTTGATGAGATCCACAAGACGCAAAGCTCATGGGTGGTGAGTGATGATCAACTTCAATCAGAGCTTAGAGTTTCTATATCAGCGGTGGT
GATACCAGCTTACCGGTCCTTTTTGGGGAGGTTTTCACAATATTTAACCTCCGGAAGGCAATCGGAAAAGTACATAAAATATCAGGCTGAAGATTTAGAG
ACTTCCATTGATGAACTTTTTGATGGAAATCCTGCGTCCGTGGTCCGAAAGAGACCATAA
AA sequence
>Potri.017G068000.1 pacid=42814642 polypeptide=Potri.017G068000.1.p locus=Potri.017G068000 ID=Potri.017G068000.1.v4.1 annot-version=v4.1
MEKELSEKHPPEKQLSNNSDSYVNKENGTNIITNLNANHDDHPETETCDLLVSQSPKTEVKVEESDNISHEIEEVHQEEKESDEKIEDSPPTPPEINYTI
ETVSLDIDQFLITLSSTPKDAIETIDGESKEEKDGKVSIEIPVFVEKILDLVEEKVANHDLNEGKRKWGQNPEEDSSFLEGINRISKLTSSIDKLRPDPN
PAALINRIGGIQQQAMTCLENEFKVILEDIKHSDQDPTNDAKGKQHEADHSVVQESESIETDNVLGYSDYAVSILNRIAKAMIEGGFESECCQLYMMIRG
QAFDECFIETGFEKISIDEVQRMPWEALEREIPIWIKAVKECASIYFVEELKLAEAIFSDYSSISSNLFSNLIRTVMIQLLNFAEGVAMTKRSAEKLFKF
LDMYETLRDSLPAMGALFSEEYENELKTETTTARCRIGEAAIYIFCDLENSIKSDTGKTPVPGGAVHPLTRYTMNYLKYGGEYKATLEQLFREHSKIERA
DSTSRPRFEGETQNSNNDIAEENQSPFSNQLMRVMDLLDSNLGANSKLYKDIALSCIFMMNNGRYIVQKIKGSTEIHQMIGDTWCRRKSSELRNYHKNYQ
RETWSKLLSCLGHEGLQVNGKVIKPVLKERFKSFNMLFDEIHKTQSSWVVSDDQLQSELRVSISAVVIPAYRSFLGRFSQYLTSGRQSEKYIKYQAEDLE
TSIDELFDGNPASVVRKRP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13990 ATEXO70C2 exocyst subunit exo70 family p... Potri.017G068000
[exp]
0 1

Potri.017G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.