Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17310 94 / 2e-26 unknown protein AT5G47455 82 / 2e-21 unknown protein AT5G11630 62 / 5e-14 unknown protein AT2G15000 44 / 1e-06 unknown protein AT4G34265 42 / 3e-06 unknown protein AT1G55205 42 / 3e-06 unknown protein AT2G20585 40 / 2e-05 NFD6 nuclear fusion defective 6 (.1.2.3) AT4G39300 38 / 0.0002 unknown protein AT2G33847 38 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333800 [exp] 94 / 4e-26 AT5G47455 54 / 1e-10 unknown protein Potri.006G237800 [exp] 67 / 6e-16 AT5G11630 99 / 8e-29 unknown protein Potri.001G298800 [exp] 42 / 5e-06 AT2G15000 78 / 4e-20 unknown protein Potri.004G154800 [exp] 41 / 2e-05 AT4G39300 97 / 1e-27 unknown protein Potri.018G082800 [exp] 40 / 4e-05 AT3G13674 / unknown protein Potri.002G045600 [exp] 39 / 7e-05 AT5G11630 69 / 5e-17 unknown protein Potri.009G093400 [exp] 39 / 0.0001 AT2G15000 73 / 4e-18 unknown protein Potri.009G115900 [exp] 37 / 0.0003 AT4G39300 114 / 1e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028954 [exp] 84 / 2e-22 AT4G17310 100 / 5e-29 unknown protein Lus10007477 [exp] 80 / 8e-21 AT4G17310 95 / 6e-27 unknown protein Lus10011623 [exp] 56 / 1e-11 AT5G11630 82 / 2e-22 unknown protein Lus10002035 [exp] 54 / 1e-10 AT5G11630 80 / 3e-21 unknown protein Lus10026596 [exp] 52 / 1e-09 AT2G15000 123 / 6e-38 unknown protein Lus10025365 [exp] 49 / 2e-08 AT2G15000 126 / 2e-39 unknown protein Lus10013885 [exp] 49 / 4e-08 AT2G15000 82 / 6e-21 unknown protein Lus10023655 [exp] 47 / 5e-08 AT1G55205 83 / 3e-22 unknown protein Lus10024700 [exp] 47 / 2e-07 AT1G55205 80 / 4e-20 unknown protein Lus10020971 [exp] 45 / 3e-07 AT2G15000 121 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G068600.4 pacid=42814255 polypeptide=Potri.017G068600.4.p locus=Potri.017G068600 ID=Potri.017G068600.4.v4.1 annot-version=v4.1 ATGGCCTCCTCCTCTTCATCTTGCAGGAAATTTATCTCCAAATCATCTCTATCGTCCATCAAATCATCCATCAGATCATCTAAGGCTCCTAAATCTCCCT CCACCCCCACCAGATCTGCCACCGCTTCTCACTTCCTTCTCCCATCCAAACCACCAACCTCCTCTCGATTCTCCTTTTCCAGGGCACCATGTGAGTTGGG ATGCGTTCAGTCGCTGCTGCCACTACACAGCGCGGTGGCGGCGTCGAGGATGACATCATGCTTAAGTACCACATCCAGGAATTTCCGAGCGCTCTCTCAG GGTACACTCTGCTGCACCTCTCCCGGCCTCTAA
AA sequence Show only first row Show all	>Potri.017G068600.4 pacid=42814255 polypeptide=Potri.017G068600.4.p locus=Potri.017G068600 ID=Potri.017G068600.4.v4.1 annot-version=v4.1 MASSSSSCRKFISKSSLSSIKSSIRSSKAPKSPSTPTRSATASHFLLPSKPPTSSRFSFSRAPCELGCVQSLLPLHSAVAASRMTSCLSTTSRNFRALSQ GTLCCTSPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17310			unknown protein		Potri.017G068600 [exp]	0	1
AT1G71730			unknown protein		Potri.002G063100 [exp]	6.24	0.8392
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	11.95	0.8636
AT5G39600			unknown protein		Potri.004G228566 [exp]	13.07	0.8301
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	16.24	0.8396
AT4G31930			Mitochondrial glycoprotein fam...		Potri.018G021600 [exp]	16.30	0.8210
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	18.54	0.8384
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	20.71	0.8231
AT5G55140			ribosomal protein L30 family p...		Potri.014G157400 [exp]	24.04	0.8145
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.009G111446 [exp]	25.45	0.8343
AT5G02740			Ribosomal protein S24e family ...		Potri.006G215800 [exp]	28.98	0.7797

Compare expression of checked genes

Potri.017G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.