Plant FIBer expression Database

Potri.017G069220 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24300 388 / 3e-111 GYF domain-containing protein (.1.2)
AT1G27430 371 / 1e-105 GYF domain-containing protein (.1)
AT5G42950 110 / 9e-24 GYF domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G326700
[exp]
1206 / 0 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2)
Potri.001G326500
[exp]
1183 / 0 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2)
Potri.002G262300
[exp]
94 / 5e-19 AT5G42950 714 / 0.0 GYF domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032021
[exp]
631 / 0 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2)
Lus10035191
[exp]
622 / 0 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2)
Lus10003139
[exp]
416 / 9e-121 AT1G27430 742 / 0.0 GYF domain-containing protein (.1)
Lus10011331
[exp]
410 / 1e-118 AT1G27430 718 / 0.0 GYF domain-containing protein (.1)
Lus10012078
[exp]
117 / 7e-26 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1)
Lus10032720
[exp]
115 / 3e-25 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1)
Lus10035192
[exp]
76 / 2e-15 AT1G27430 59 / 2e-10 GYF domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0673 GYF PF02213 GYF GYF domain
Representative CDS sequence
>Potri.017G069220.1 pacid=42813263 polypeptide=Potri.017G069220.1.p locus=Potri.017G069220 ID=Potri.017G069220.1.v4.1 annot-version=v4.1
ATGACTGACGGAAAGCTCAATCTACCTGACGATCTCCTCCTCTCCTCCAAATCAGCTGATGAACGCCTCTCCTCCTTCAAAGATCAATTGACTGTGGACA
ACACAATACCACTTTCTCCTCAATGGCTTTATGCTAAGCCGGTGGATGCTAAGTCATTAACTGCTGGAGCATCAGGGGAAACTCGTGCATCAAATTCTTT
GTCCCTTGGAAACTCCATTGATAACAATTTGAAAGACAATTGGCGTTTAGATGGAACCCAAGACAAGAAAGATCGGAGGAGGATTGCTTCTGACATAGAA
AGTAGCCGTCGCTGGCGTGAGGAGGAGAGGGATACAGGCTTGCTTGGTAGAAGAGATCGCAGAAAAGAGGACCATCGCGCTGATTCTGTTTCAACCAGAG
ATATATCTGAGAATAGGACTTTGTCTTCTTCAGATCGTTGGCATGACAGCAATAACCGCATTTCTGGGCATGAATCCCGAAGAGACAGCAAGTGGTCATC
TAGGTGGGGTCCGGAAGATAAAGAGAAGGGTTCTTTAACTGATAAGAGGGCAGATGTTGAGAAGGAAGACACTCACAGCGACAAACAAAATTTTGGCACA
GCTAGCCGCCCAACTTCTGACCTTGAGAATGATTCTCGTGATAAGTGGAGGCCTCGCCATCGTATGGAAGTTCATGCTGGTGGACCTGCTGTGTACCGGA
GCGCACCTGGATTTGGGTCAGATAGAGGACGAGTGGAGAGCTCAAATGTGCGGTTTGCTGCTGGACGAGGGAGGTCTAACAATAGTGGGAACTTTCAAAA
TGGCAGGCATCTTAATTCTTCTCCTATTGGGTCCATTCCTGTGAATAAAAATCATGCATTCTGTTATCCAAGGGGAAAACTTCTTGACATTTACCGAAAG
CATAAGACTCTTCCAAGTTTTGATCCTATGCCAGATGGGATGGAACATGCATCTCCAATAACACAGGAAACTGCTATCAAGCCATTGGCTTTTGTTTCCC
CTGATGCAGAGGAAGAGGCTGTCCTTGGAGATATATGGCAGGGAAAAATCACAAGCAGTGGAGGATTGAAAAGCTCATTTAGAGACAATGACACATCAAA
TAATAATACTGCAGGCTTTGGTGAGGTGCCTTTAGGTGAGGGGAACCCAAATTCCTCTGTTAAGACTGAAGAAATTGCTGACTCTTTTGGAAAAATTACT
GTTAATGCTTCTGGTCAAGGTATTGGTTCTGAGATGTTAGATACATCAATGGCCGAGGAAAAGGATTCACAAAAAGATGGCACACAGAAGCTTACAACAA
CAATTGGCAGAGAGTTGACGGATGACTTTGTGCGTGCAGTTTCCAAGAAAGACGATTGCAGTGTCGGGGAGTGTGGTCCAAGCGACAATGTTGTGGAGTT
GAAAGCTTTTGAAACGTCATCAGTGGAAGATGTGGCTTCAAAGAAGCACCTTAAGTTGGGGGATAACGAGCCAACTACTTTTGAGATTGGTAGCCAGCTT
CCTGGTGATTCCAGTTCTCTATTTGATTTTATTATTCCACTCGAGGAGCTATCATTGTGCTATCTTGATCCTCAAGGGGCAATCCAGGGACCGTACCTTG
GTATTGATATCATTGCATGGTTTGAGCAAGGATATTTTGGAACTGATCTACCAGTTTGTTTGTCAGATGCTCCCAGTGGATTACCGTTCTTTGAGCTTGG
AGATATTATGCCTCACCTTAAATTTAAACCTGGGTGCGCTTCAAGCACTAGTCCATCTGCTAAGTTACAACTATCGGAACCTGTTGGAGAAAACTTGGAA
GGGAGCGCACTGCCTCCTGCTTCTTCTCTTGAATTCAAGGGTTCTTCTGTCAGCGAAGAACTGCAGTATGCCTCATCTGGATTTGAGGCCATCCCTAGTG
TTAGTGGTCAGTCAAGAACACCTGATCATGGTTTTCGCCCCAGGACAGTGGATTCTGATGATCAAAGATTCCAAAATATTGTTTCTTTGGATGAAGAAAT
TGTCTTTCCTGGAAGGCCTGGAAGCAGTGGCAACCCTGTGATGACAGATGCCGCAGACATTCAGAGTTTTGTTTCTAATCCTCCTAGCCACCCTGTCATC
TTAAATGAATTTTCAGAAACTGGCATGCTTACTCATCAGGATGAAATAGTTCATCCATTTGGCTTGCTGATGTCTGAGCTCAGAAGCAACTCTCATCCAA
AGCATGCTCAAGCATCCTATCTGGCTTCAAGCATGAGTGAGGGTCATGCTATGGATCCTTATACAGAGCGTGATGCTGCTCTTGCTAGCCACAGGTCCTT
TGATTTAGTATCTGATCAATCCCGTTATACAGATACATGGCCTGAAGATTATAGTAAAAAGCCACTCATGAACCCCCACATTGATCTAGGTACCACAGAC
ACTCGACACTTATTTCAGAGGCAACCTGAGTTCAATGATTTTGACCAGCAGCATCTCATGCCACAGAAGATGCAAAACGAACGTCAACAACAGAATCATG
TATCTCATCCCTTCTTACAAGAACTGGGTTTTGAGCAAATCCCTTCTCATCTGATTGAACTGCAATTTCAACAGCAGAGAAAGTTGGAGCTCCAACAACA
GTGGCAGTTGGAGCTTCAACGGTTGGAGCTTCAACGGCAGCAGCAGTTGGAGCTTCAACGGCAGCAGCAGTTGGAGGTTCAACGTCAGCGGCAGTTGGAG
GTTCAACGTCGGCAGCAGTTGGAGCTTCAACGTCGGCAGCAGTTCGAGCTTCAACGTCGGCAGCAGTTGGAGCATCAGCGGCGGCAGCAGTTTGAGCTTC
AGCAACAGCAGCAACAGTTTGAACTTCAGCAACAGCATCATTTACTGCATCAACAGCAGCAGCAACAACAGCTTCATCAGTACCAAATGAAATTGCAGCA
GCAGCAGGTTCTGGAACAGTTGCTGCAGCATCAGATGTCTGATCTTGGCTATGGGCAGGGAAAGGGAGATCCAATGAGAGACAACTTGGTTGATCAGAGT
CAATTTAGGACACTACTTCCAGAACTGCAGCGAAATCTGCATATTCCAAGGCACTTGGATCTGTCACTGGAGCAGGTAATTCGAGCAAAGATTGGCCAGA
ATAATCTTCAAGAACCTCAGACTGATATCTTAGACCTCTTATCACAGGTGAAGCATGGTAATATATTGCCTTCAGACCTGCAATTCCATCATCAGCTAGA
ACAGATGCAGGCGCAAGAGTTGTCTTTGGCAAGGTCTACAGGATTTAACACTTCAGATTGTCACCTGCAACAGCAGAGGCAATCCTCACATGATGAACAT
TTAAGCCACATCAAATGGAATCATGCTTTACAGGAGTTACATCAGGGTGGGTTTTATGAGCCTAGCTCTATGGCATTTGACCATCCGACTTCTCTTCCTG
CTATCACACTAGGGATTAAGTTGGATAATGTAAATGGTCATTCCCAAGGTCCAGATTCAGCAGAACATCTATATATGCATCCTGCTGAGCAACTGGGTTC
TGTTTCTTCAAATGCTCCCTCTTGTGACCAACAAGTTCTTGATGATATTTATGCTTCTCATCCTGAAATGACAGAGAACTACTTCCCTGGAAAACGAAGG
CAGCAAGAGAATAGTTGGGTTGAAGGAGGGATGCAACAGCTGCATCATGAAAATGAAAGAAAAAGAAATGTTTCAGAAGCTTCAGGAAACTCTAGTATTT
GGTTATCAGGTCAACGAGATGAGGAGAGCTCGAAGCAAGTTTTAATGGATCTTCACCAAAAAATAGGTCTTCAGTCTATTCACTCATCAGAAGATGATTA
TGGGCACCTTACATCCTCTTCAAAGTCTCGGGAATCCTTTTGGCCGATCACTGATTCATCTTCTTCAAATCATAATCCAGATCAAGAAGTTGCCATGAAT
AACTCATTTATGGATAGGCCTCAACATTTGAACTCAAATTCTCTGTTGCATGATAATCCTGCCATGGCCTTGAGTGGTCAATTACACCTAGGAAATGGTG
AAAGATTGCATGGGTCAAATTCTGGAGCACTACTGGAAGAACCAACTTTTTTGTCTGGCATGATAGATACTTCTCAAGCTAATCATGTGGATAACAGGTT
TGGTTCAAAATATACCAAGGATAAAGACTTGGCAGAATTGGATAACAGATCTGGGTCCAAATGTGTGAGGGCCATGTCCAGGTCTGTTTCACACATTGAA
GAAAACTTTGTTGAACAAGCTGAAACTGCTATGGATCTTGTTAATGCCCATAGCAGGCATAGTTCACTAAGCAGTGCTGGTGGATATGGAGGCTTACATG
GCTATGAGATGGGATTAGATAATTCGACCAGTGAAGAGGTTTCTAATGACAGGGTTATATTAAGTAAAGGGCTTGACAATTCCTTGCATAAACACCCACC
AGTGTCCCGAGCCTTATCTTCCCTGGATGCTTTGTCAGACATGGGATCTGCTTCGCATAACAAGCATAAAAATCCAACAAGCATTGCAACTTCTGATGAA
AGGAGGAACGAGTCTGTAGAGAATTTAGCAGCAGCATGGGGAGGTGATACTCAAGCATCTGGCATGAAAGAAGTGCGTTTTAGGAGGACTGCGTCTTACA
ATGATGCTGGTATAACAGAGACATCATTCATAGATGTGCTAAAAAAGCCTGTTTTTTCTGAGGCTGAAGCAGCTAATGCGGCTGCCTTGGAATCATCTGA
TGGTTCACTGACTGGACGAAGTGGGAAAAAGAAAGGGAAGAAAGGAAGGCAGATTGATCCTGCTCTCCTTGGCTTCAAGGTTTCTAGCAATCGCATTATG
ATGGGTGAGATACAACATCTTGATGACAACTGA
AA sequence
>Potri.017G069220.1 pacid=42813263 polypeptide=Potri.017G069220.1.p locus=Potri.017G069220 ID=Potri.017G069220.1.v4.1 annot-version=v4.1
MTDGKLNLPDDLLLSSKSADERLSSFKDQLTVDNTIPLSPQWLYAKPVDAKSLTAGASGETRASNSLSLGNSIDNNLKDNWRLDGTQDKKDRRRIASDIE
SSRRWREEERDTGLLGRRDRRKEDHRADSVSTRDISENRTLSSSDRWHDSNNRISGHESRRDSKWSSRWGPEDKEKGSLTDKRADVEKEDTHSDKQNFGT
ASRPTSDLENDSRDKWRPRHRMEVHAGGPAVYRSAPGFGSDRGRVESSNVRFAAGRGRSNNSGNFQNGRHLNSSPIGSIPVNKNHAFCYPRGKLLDIYRK
HKTLPSFDPMPDGMEHASPITQETAIKPLAFVSPDAEEEAVLGDIWQGKITSSGGLKSSFRDNDTSNNNTAGFGEVPLGEGNPNSSVKTEEIADSFGKIT
VNASGQGIGSEMLDTSMAEEKDSQKDGTQKLTTTIGRELTDDFVRAVSKKDDCSVGECGPSDNVVELKAFETSSVEDVASKKHLKLGDNEPTTFEIGSQL
PGDSSSLFDFIIPLEELSLCYLDPQGAIQGPYLGIDIIAWFEQGYFGTDLPVCLSDAPSGLPFFELGDIMPHLKFKPGCASSTSPSAKLQLSEPVGENLE
GSALPPASSLEFKGSSVSEELQYASSGFEAIPSVSGQSRTPDHGFRPRTVDSDDQRFQNIVSLDEEIVFPGRPGSSGNPVMTDAADIQSFVSNPPSHPVI
LNEFSETGMLTHQDEIVHPFGLLMSELRSNSHPKHAQASYLASSMSEGHAMDPYTERDAALASHRSFDLVSDQSRYTDTWPEDYSKKPLMNPHIDLGTTD
TRHLFQRQPEFNDFDQQHLMPQKMQNERQQQNHVSHPFLQELGFEQIPSHLIELQFQQQRKLELQQQWQLELQRLELQRQQQLELQRQQQLEVQRQRQLE
VQRRQQLELQRRQQFELQRRQQLEHQRRQQFELQQQQQQFELQQQHHLLHQQQQQQQLHQYQMKLQQQQVLEQLLQHQMSDLGYGQGKGDPMRDNLVDQS
QFRTLLPELQRNLHIPRHLDLSLEQVIRAKIGQNNLQEPQTDILDLLSQVKHGNILPSDLQFHHQLEQMQAQELSLARSTGFNTSDCHLQQQRQSSHDEH
LSHIKWNHALQELHQGGFYEPSSMAFDHPTSLPAITLGIKLDNVNGHSQGPDSAEHLYMHPAEQLGSVSSNAPSCDQQVLDDIYASHPEMTENYFPGKRR
QQENSWVEGGMQQLHHENERKRNVSEASGNSSIWLSGQRDEESSKQVLMDLHQKIGLQSIHSSEDDYGHLTSSSKSRESFWPITDSSSSNHNPDQEVAMN
NSFMDRPQHLNSNSLLHDNPAMALSGQLHLGNGERLHGSNSGALLEEPTFLSGMIDTSQANHVDNRFGSKYTKDKDLAELDNRSGSKCVRAMSRSVSHIE
ENFVEQAETAMDLVNAHSRHSSLSSAGGYGGLHGYEMGLDNSTSEEVSNDRVILSKGLDNSLHKHPPVSRALSSLDALSDMGSASHNKHKNPTSIATSDE
RRNESVENLAAAWGGDTQASGMKEVRFRRTASYNDAGITETSFIDVLKKPVFSEAEAANAAALESSDGSLTGRSGKKKGKKGRQIDPALLGFKVSSNRIM
MGEIQHLDDN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24300 GYF domain-containing protein ... Potri.017G069220
[exp]
0 1
AT3G61690 nucleotidyltransferases (.1) Potri.012G000900
[exp]
1.00 0.9206
AT4G11270 Transducin/WD40 repeat-like su... Potri.003G132900
[exp]
1.41 0.9158
AT2G17930 Phosphatidylinositol 3- and 4-... Potri.005G114300
[exp]
3.00 0.9083
AT1G48090 calcium-dependent lipid-bindin... Potri.008G100600
[exp]
3.46 0.8997
AT3G61690 nucleotidyltransferases (.1) Potri.014G097600
[exp]
3.60 0.8637
AT1G58230 binding (.1) Potri.002G111000
[exp]
3.74 0.8891
AT1G24300 GYF domain-containing protein ... Potri.001G326700
[exp]
5.47 0.8962
AT3G11960 Cleavage and polyadenylation s... Potri.006G197200
[exp]
7.74 0.8525
AT4G39420 unknown protein Potri.005G086100
[exp]
7.93 0.8773
AT1G17680 tetratricopeptide repeat (TPR)... Potri.013G128900
[exp]
9.79 0.8477

Potri.017G069220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.