Plant FIBer expression Database

Potri.017G069550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G069550.1 pacid=42813906 polypeptide=Potri.017G069550.1.p locus=Potri.017G069550 ID=Potri.017G069550.1.v4.1 annot-version=v4.1
ATGCTCTTGGGCAGTTTTGCCTGTGCAGTGGCATGGGGTTGTGTGGTGATCTGTTGGAGGTTTTGCTTGTCCTATTGGCTGAAGATTGTTTTGATCCTGC
TGTGGTTTGATGGTGGTGGTTGCGACGCTCGTGTTTGGGACTGCCTGGTTTCTAGCTGCTGTGTTTGTGCAGCTTTTTTGGCTTTGGGTTTTTTTGTTCA
GCAAGCTAGTCTTGCTTTTGTTGCTGTTCAAGGGAGCCTGTTCTTTTTTATCAAAGGAGTCTGTCCCCTCTGCTTGAATATGTCTGTATATTTAACCATT
GGTTCTCCAGCTTTGTTTTATTAA
AA sequence
>Potri.017G069550.1 pacid=42813906 polypeptide=Potri.017G069550.1.p locus=Potri.017G069550 ID=Potri.017G069550.1.v4.1 annot-version=v4.1
MLLGSFACAVAWGCVVICWRFCLSYWLKIVLILLWFDGGGCDARVWDCLVSSCCVCAAFLALGFFVQQASLAFVAVQGSLFFFIKGVCPLCLNMSVYLTI
GSPALFY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G069550
[exp]
0 1
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Potri.009G082700
[exp]
9.21 0.9750
AT1G17285 unknown protein Potri.003G073050
[exp]
14.83 0.8814
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.001G263000
[exp]
16.43 0.9555 Pt-UBQ11.1
AT1G69480 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G165001
[exp]
17.88 0.8364
AT3G61420 BSD domain (BTF2-like transcri... Potri.005G061366
[exp]
18.43 0.9030
Potri.001G255904
[exp]
19.97 0.9553
AT3G01820 P-loop containing nucleoside t... Potri.001G333100
[exp]
22.44 0.8302
AT5G64620 ATC/VIF2, C/VIF... cell wall / vacuolar inhibitor... Potri.005G195200
[exp]
27.34 0.9412
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.004G071000
[exp]
28.24 0.9393
Potri.010G219950
[exp]
28.28 0.9524

Potri.017G069550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.