Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40870 852 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 833 / 0 UKL2 uridine kinase-like 2 (.1) AT4G26510 732 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 726 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 679 / 0 UKL5 uridine kinase-like 5 (.1) AT1G73980 92 / 1e-19 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 82 / 1e-17 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G26190 85 / 2e-17 Phosphoribulokinase / Uridine kinase family (.1) AT1G32060 72 / 1e-13 PRK phosphoribulokinase (.1) AT2G01460 47 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332100 [exp] 898 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 745 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 744 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G071200 [exp] 676 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.006G091000 [exp] 87 / 7e-19 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.015G055400 [exp] 87 / 5e-18 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 86 / 2e-17 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 85 / 3e-17 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.001G134000 [exp] 74 / 3e-14 AT1G32060 699 / 0.0 phosphoribulokinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041569 [exp] 861 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 853 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 710 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 674 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 671 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 581 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10030570 [exp] 88 / 3e-18 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10024350 [exp] 87 / 4e-18 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10009040 [exp] 87 / 7e-18 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 87 / 7e-18 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain CL0533 [poplar] [flax] PRTase-like PF14681 [poplar] [flax] UPRTase Uracil phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G069600.2 pacid=42812962 polypeptide=Potri.017G069600.2.p locus=Potri.017G069600 ID=Potri.017G069600.2.v4.1 annot-version=v4.1 ATGCCGGAAGAGACCAATTCTATTGACTACGTAATGGAGAAGGCCTCAGGTCCTCACTTCTCCGGCCTCCGTCTCGATGGCCTGCTTTCTTCTCCTCCGT CTTCCTCCACTGCGTCTCCCTCTCACCGCTCCGCCTCCGCTTCCGAATCCAATGCTCCCAAACAGCCTTTTGTCATTGGTGTTTCTGGTGGTACGGCTTC CGGTAAGACTACAGTGTGCGATATGATCATTCAACAGCTTCATGATCACCGTGTTGTTCTTGTTAATCAGGATTCATTTTACCGTGGCTTGACGGCTGAA GAATCGAAGCGAGTGCATGAGTATAATTTTGATCATCCTGATGCTTTTGATACGGAGCAGCTTTTAGACTGTGTTCAAAAGATGAGAAGTGGGCATTCTT ATCAAGTTCCAATCTATGATTTTAAGAGCCATCGCCGATGTTCGGATAGCTTCAGGCAGGTAAACGCTTCTGATGTGATTATCCTTGAGGGGATTCTGGT TTTCCATGACCAGCGTGTTCGCAACCTGATGAACATGAAAATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATAAGGCGTGACACAGTT GAGAGGGGTAGGGACATAAACTCTGTTCTTGAACAGTATGCTAAATTTGTGAAGCCTGCTTTTGATGATTTTGTGTTGCCTTCAAAGAAATATGCTGATG TGATCATCCCACGGGGAGGTGACAATCATGTTGCCATTGATTTAATTGTGCAACATATCCACACTAAGCTAGGTCAACATGATCTGTGCAAAATATATCC AAATGTGCATGTCATTCAGTCAACTTTTCAGATAAGAGGTATGCATACACTGATTCGAGACAAGGAGATATCAAAGCATGATTTTGTATTTTATTCAGAC CGACTTATCCGTCTGGTTCTGGAACATGGTCTGGGCCATTTGCCATTCACTGAGAAGCAAGTAGTGACACCAACAGGATCGGTTTACACTGGTGTTGACT TTTGCAAGAAATTATGTGGGGTTTCTATTGTTCGAAGTGGAGAAAGCATGGAAAATGCGTTGCGAGCATGCTGCAAAGGAATAAAAATTGGAAAATTACT CATCCACCGTGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCCTGCTTCTAGACCCTGTTCTTGCT ACAGGTAACTCTGCAAACCAAGCGATAGAACTTCTCATACAGAAAGGAGTTCCAGAATCCCACATCATATTCCTAAACCTAATATCTGCTCCTGAGGGCA TCCATTGCGTTTGCAAAAGGTTCCCATCCTTGAAAATCGTCACTTCAGAGATTGATGTTGCCTTAAACGAGGAATTTCGGGTCATACCAGGCATGGGTGA GTTTGGTGACCGGTACTTTGGCACTGATGATTAA
AA sequence Show only first row Show all	>Potri.017G069600.2 pacid=42812962 polypeptide=Potri.017G069600.2.p locus=Potri.017G069600 ID=Potri.017G069600.2.v4.1 annot-version=v4.1 MPEETNSIDYVMEKASGPHFSGLRLDGLLSSPPSSSTASPSHRSASASESNAPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAE ESKRVHEYNFDHPDAFDTEQLLDCVQKMRSGHSYQVPIYDFKSHRRCSDSFRQVNASDVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTV ERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVHVIQSTFQIRGMHTLIRDKEISKHDFVFYSD RLIRLVLEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKLLIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLA TGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGMGEFGDRYFGTDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.017G069600 [exp]	0	1
AT3G50780			unknown protein		Potri.005G129700 [exp]	6.78	0.8489
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	11.74	0.8067
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	11.83	0.7778
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	22.00	0.8003
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	22.13	0.7969	BGAL1.1
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.017G130200 [exp]	26.32	0.7613
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.005G233500 [exp]	30.03	0.7560
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	38.61	0.7593
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	39.47	0.7889
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.012G115500 [exp]	39.94	0.7870

Compare expression of checked genes

Potri.017G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.