Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40470 294 / 2e-94 RNI-like superfamily protein (.1) AT5G23340 67 / 1e-11 RNI-like superfamily protein (.1) AT1G80630 53 / 3e-07 RNI-like superfamily protein (.1) AT4G15475 50 / 2e-06 F-box/RNI-like superfamily protein (.1) AT1G21410 46 / 4e-05 SKP2A F-box/RNI-like superfamily protein (.1) AT5G01720 46 / 7e-05 RNI-like superfamily protein (.1) AT2G25490 45 / 9e-05 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G77000 43 / 0.0003 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068500 [exp] 55 / 1e-07 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 54 / 1e-07 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 52 / 8e-07 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 50 / 2e-06 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 50 / 3e-06 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 50 / 4e-06 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.017G056400 [exp] 44 / 0.0002 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 42 / 0.0006 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.003G179100 [exp] 42 / 0.0008 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002515 [exp] 447 / 9e-152 AT5G40470 341 / 3e-110 RNI-like superfamily protein (.1) Lus10022269 [exp] 360 / 3e-120 AT5G40470 265 / 2e-83 RNI-like superfamily protein (.1) Lus10012764 [exp] 68 / 9e-12 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 60 / 4e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002913 [exp] 57 / 2e-08 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 55 / 8e-08 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 54 / 3e-07 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10013444 [exp] 53 / 3e-07 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 49 / 7e-06 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 48 / 2e-05 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G069800.1 pacid=42814628 polypeptide=Potri.017G069800.1.p locus=Potri.017G069800 ID=Potri.017G069800.1.v4.1 annot-version=v4.1 ATGGATGACATGCTATGCGATGAGCTGCTTCAAGAAATATTTACAAGAATACCGAAATCATTACCACCACCACCGTCATCAGCTTCAGCAGCATCGGTAT CCTTGGTCTCTAAGCGGTGGCTCCACCTCTACCGGACCTCAAAAACCTCTCTTTCTCTCAGACTTAACCCTGATGATTCCACAATTTCCTCTCTGACTTC TGTCCTCTCTCACTACCCTTTTCTCTCTTCTCTATCTCTCTTCCTTCTCTCCTCTGACCCCACAGTACCTGCTACCATAACTTCCCCTCCAGCTTTCTAT GATCGTCTTCTCTTTATAGTCTCCGCTTTTTGCTCCAGTCTTAAACACCTCAGGTTCTTGGCTGGTCCTGTCTCACAATCTTCTCTCTTCTCTCTCTCTA ATTCTTGCACCTTTTTGAACTCTCTCACTATCTCTCTCTATAGGCCTCTCTATTTTAACTGGGTTGTTTCCTTTTCTTGCTTAAAGGAGCTGTCCGTCTA TGTATCTGGCTTTTATGGAGTTGATGATTGCAATAGAGAATCTGGCTTCTGTATAAATGAAGAGCTTGACGCTGAATTGGGCTTAGAGAGTCTTTTTTTG TCGGGGATTGGAGGAGAAGATTATGGTGTTGGTTGGTTGTGGAGGAGCAGCAAAAGGCTCAAGAAATTGAAGCTAAAGAGCTGCGAAGGTATTGGTGATG GAGGGTCCTTTTTGTCATTTGCTAAGTGCTTGAAGGGTCTCCAAGAAGTGGAGATAAGGGCTTGTCGGAGTATAGTTAATGGGGTTTTGTTAAAATTGGC AGAGAATTGTGATTCCTTGTATTCTCTATTGGTTTATGATGGTGGTAATAGAGAGGGCTTACATCACTTCATTAGCAGCTGCAGGTGTGATTTGCAAAAA CTCGATTTCCGATTACCTTTGGACCTGAGGAATGATCATCTCTCAGCTATCGGACTGAATTTTAGGGGTCTCTCAACTCTTAGGCTCCAAAGTTGTTGTC TGGTGAGTGGTGAAGGGCTCAAGGCTCTTGGGATAGCATTGAATTCAGGCCTTGAAGAACTGGCATTGATTAACTGTGATGTTGTTGAAAGGGAATCCGG ATTGCTTGCCACATTAGGACAGCATACAAGGCAATTAAAGAAACTGGACTTGTCTTATAATGAGTTTTTGCTCGATAAGGAGTTCATCTCCATGCTAGTT TCTTGTAATTGTTTGATTGAATTGAATTTAAGGCGGTGTGCAGGACTTACCACGGTGTCGATGGTTTCTATGTTTAAGAACTGCAGGAAATTGCAGAGTG TTGATATCATGCATTGTGATGGGATTGGAGCTGAGGCTGTTGAGTTATTTGTCCTCAATTCACCACAATTGAGAGGTCTTCAAGTGGAGGAAAACAAGGT TTCAGATGTTGCAAGGTCATGGGCATCGCATAAACTCATTCAGATTGTTTCTTAA
AA sequence Show only first row Show all	>Potri.017G069800.1 pacid=42814628 polypeptide=Potri.017G069800.1.p locus=Potri.017G069800 ID=Potri.017G069800.1.v4.1 annot-version=v4.1 MDDMLCDELLQEIFTRIPKSLPPPPSSASAASVSLVSKRWLHLYRTSKTSLSLRLNPDDSTISSLTSVLSHYPFLSSLSLFLLSSDPTVPATITSPPAFY DRLLFIVSAFCSSLKHLRFLAGPVSQSSLFSLSNSCTFLNSLTISLYRPLYFNWVVSFSCLKELSVYVSGFYGVDDCNRESGFCINEELDAELGLESLFL SGIGGEDYGVGWLWRSSKRLKKLKLKSCEGIGDGGSFLSFAKCLKGLQEVEIRACRSIVNGVLLKLAENCDSLYSLLVYDGGNREGLHHFISSCRCDLQK LDFRLPLDLRNDHLSAIGLNFRGLSTLRLQSCCLVSGEGLKALGIALNSGLEELALINCDVVERESGLLATLGQHTRQLKKLDLSYNEFLLDKEFISMLV SCNCLIELNLRRCAGLTTVSMVSMFKNCRKLQSVDIMHCDGIGAEAVELFVLNSPQLRGLQVEENKVSDVARSWASHKLIQIVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	3.87	0.9250
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.008G111000 [exp]	4.24	0.9360
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	4.89	0.9316
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G014200 [exp]	5.09	0.9425	Pt-FLA14.16
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	5.47	0.9227
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.007G131300 [exp]	7.41	0.9038	GLX2.2
AT5G43150			unknown protein		Potri.010G088200 [exp]	8.00	0.9172
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	9.48	0.9054	Pt-SEC14.2
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	9.79	0.9004
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	11.40	0.9031

Compare expression of checked genes

Potri.017G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.