Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACG12.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40760 902 / 0 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1) AT3G27300 878 / 0 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G13110 476 / 2e-163 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 474 / 1e-162 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 471 / 1e-161 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 353 / 2e-115 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337400 [exp] 938 / 0 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.014G166800 [exp] 486 / 3e-167 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 461 / 1e-157 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 455 / 6e-155 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 363 / 3e-119 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.005G005866 [exp] 54 / 5e-08 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014615 [exp] 929 / 0 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 898 / 0 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 810 / 0 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10006386 [exp] 476 / 1e-163 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 462 / 1e-157 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 460 / 7e-157 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 394 / 7e-133 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012339 [exp] 82 / 7e-19 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00479 [poplar] [flax] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02781 [poplar] [flax] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G070200.1 pacid=42813040 polypeptide=Potri.017G070200.1.p locus=Potri.017G070200 ID=Potri.017G070200.1.v4.1 annot-version=v4.1 ATGGGATCAGGTCAATGGATGGTAGAGAAGAGATCTAGTTTTAGAAGTGATTCATTTTCAAAGGAATACGAGACTGTTCCCGAAACTGGGTGCCTCTCAA TTATTGTTCTTGGTGCTTCTGGTGATCTAGCCAAGAAGAAGACTTTCCCTGCTCTCTACAATCTTTATCGCCGGGGATTTCTGCAATCAAATGAAGTTTA CATTTTTGGATATGCAAGGACCAAGATTTCAGATGATGATCTCAGAAATCGAATCCGTGGATATTTTGGCAAAGATGCTTCAGAGCACTCTGAAGATGTA TCAAAGTTCTTGCAACTGATTAAATATGTAAGTGGTTCTTATGATACTGAGGATGGCTTTCGGCTATTGGATAAGGAAATTTCAGAGCATGAAGTATCAA AAAACAGTGCAGAAGGATCATCTCGAAGACTATTTTATCTTGCACTCCCCCCATCAGTGTATCCACCAGTCTGCAGGATGATCAGAAAGTGTTGCATGAA TAGATCTGATCTTGGTGGATGGACTAGAATTGTCATTGAGAAACCTTTCGGCAAAGATTTGGAATCTGCAGAAAAACTCAGTGCCCAGATTGGAGAGTTG TTTGAGGAACCACAACTTTACCGAATTGATCATTACTTGGGAAAAGAATTGGTGCAGAACTTGCTAGTACTCCGTTTTGCAAATCGCTTCTTTTTACCTC TTTGGAACCGCGACAACATTGACAATGTACAGATTGTGTTCCGAGAAGATTTTGGAACAGAAGGCCGTGGTGGATATTTTGATGAATACGGGATTATCCG TGATATTATTCAAAATCACTTATTACAGGTTCTTTGTTTGGTTGCCATGGAGAAGCCCGTTTCTCTCAAACCTGAACATATCCGGGATGAGAAAGTGAAG GTTCTTCAATCAGTACTTCCAATCAAAGATGAAGAGGTTGTTCTTGGACAGTATGAAGGCTACAGAGATGACCCAACAGTTCCTGATCACTCAAATACCC CAACATTTGCAACTGTTGTTCTGAGAATACATAATGAAAGATGGGAAGGGGTTCCTTTCATACTAAAGGCCGGGAAAGCATTGAATTCAAGGAAGGCAGA GATACGTGTTCAATTTAAGGATGTTCCTGGTGATATATTCAAATGTCAAAAGCAAGGAAGAAATGAGTTTGTGATACGCCTGCAACCCTCAGAAGCCATG TACATGAAACTTACGGTGAAGCAGCCTGGACTTGAGATGTCTACTGTTCAAAGTGAACTAGACTTGTCATATAAGCAACGTTATCAAGGGGTTGCCATCC CGGAGGCATATGAACGTCTGATTCTTGACACAATTAGAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGGCGGCATGGGAGATTTTCACACC CCTTCTGCATAGGATTGATGATGGCGAGATGAAGCCATTGCAATACCAACCAGGCAGCCGAGGTCCGGTCGAAGCAGATGAGTTGTTGGCAAAAGCTGGT TATGTTCAAACACATGGCTATATCTGGATTCCTCCCACATTATAG
AA sequence Show only first row Show all	>Potri.017G070200.1 pacid=42813040 polypeptide=Potri.017G070200.1.p locus=Potri.017G070200 ID=Potri.017G070200.1.v4.1 annot-version=v4.1 MGSGQWMVEKRSSFRSDSFSKEYETVPETGCLSIIVLGASGDLAKKKTFPALYNLYRRGFLQSNEVYIFGYARTKISDDDLRNRIRGYFGKDASEHSEDV SKFLQLIKYVSGSYDTEDGFRLLDKEISEHEVSKNSAEGSSRRLFYLALPPSVYPPVCRMIRKCCMNRSDLGGWTRIVIEKPFGKDLESAEKLSAQIGEL FEEPQLYRIDHYLGKELVQNLLVLRFANRFFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRDEKVK VLQSVLPIKDEEVVLGQYEGYRDDPTVPDHSNTPTFATVVLRIHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDIFKCQKQGRNEFVIRLQPSEAM YMKLTVKQPGLEMSTVQSELDLSYKQRYQGVAIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPLQYQPGSRGPVEADELLAKAG YVQTHGYIWIPPTL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.017G070200 [exp]	0	1	Pt-ACG12.2
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.013G004100 [exp]	5.83	0.8388	AdoMet_e2,Pt-SAMS.1
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.012G082200 [exp]	10.39	0.7890
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.019G092800 [exp]	11.57	0.7216
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.008G040700 [exp]	13.71	0.7096
AT4G14420			HR-like lesion-inducing protei...		Potri.008G165200 [exp]	14.00	0.7297
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.008G099300 [exp]	16.24	0.8015	AdoMet1,SAMS.2
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	17.32	0.7287
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	28.28	0.7911
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	28.56	0.7800
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	34.05	0.7898

Compare expression of checked genes

Potri.017G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.