Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40670 412 / 1e-146 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070401 [exp] 110 / 4e-31 AT5G40670 99 / 4e-27 PQ-loop repeat family protein / transmembrane family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014572 [exp] 430 / 6e-154 AT5G40670 418 / 3e-149 PQ-loop repeat family protein / transmembrane family protein (.1) Lus10032114 [exp] 338 / 5e-118 AT5G40670 329 / 5e-115 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF04193 [poplar] [flax] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Potri.017G070300.1 pacid=42813560 polypeptide=Potri.017G070300.1.p locus=Potri.017G070300 ID=Potri.017G070300.1.v4.1 annot-version=v4.1 ATGGCATCATGGAATTCAATTCCATTGGAAATCACCTACGAAACGTTTGGATGGATCGCCTTCTTTTCATGGTCTATCAGTTTCTATCCTCAAGTAATCA TGAATTTCCGACGCAAAAGTGTGGTGGGGTTGAACTTTGATTTCGTGGTGTTGAATTTGACGAAACATTCTTCGTATTTGATATACAACGCTTCTCTTTA CTTTAGCTCTGCTATTCAACACCAGTACTTTGAAAAATATGGCCATGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCAATTCATGCTGTT TTGTTAACAGCAATTACATTATTCCAAATTGTAATCTATGATCGTGGAAATCAAAAGGTCTCTAAGATTTCTATTGCAACTGTGTGTGTTGTGTGGTTAG TTGCTGCAGTATGTTTTTTTATAGCTTTGCCTAGCCACTCTTGGCTGTGGCTCATCTCCATCTTCAACTCCATTCAAGTTTTTATGACTGTCATCAAGTA TATTCCTCAGGTGATCATGAACTTCATGCGAAAGAGCACAGATGGCTTCAGCATTGGAAACATTTTACTTGATTGTCTTGGAGGGGTGACAAATTATGCT CAAATGGCAGTGCAATCTATAGACCAAAATTCTTGGGTGAACTTCTATGGCAACATAGGAAAAACGTTGTTATCTTTGGTGTCCATATTCTTTGACCTTG TATTCATGTGTCAACACTATATCTTGTATCCTGAGAACAAAGCTGTTCCTCCCAAACTCAACAAGGAGGGAACAGAGCCACTTATCAGGTTTTCTGAGGA GCCAGCTGCGCCAGAAAATGTGTAA
AA sequence Show only first row Show all	>Potri.017G070300.1 pacid=42813560 polypeptide=Potri.017G070300.1.p locus=Potri.017G070300 ID=Potri.017G070300.1.v4.1 annot-version=v4.1 MASWNSIPLEITYETFGWIAFFSWSISFYPQVIMNFRRKSVVGLNFDFVVLNLTKHSSYLIYNASLYFSSAIQHQYFEKYGHGEMIPVAANDVAFSIHAV LLTAITLFQIVIYDRGNQKVSKISIATVCVVWLVAAVCFFIALPSHSWLWLISIFNSIQVFMTVIKYIPQVIMNFMRKSTDGFSIGNILLDCLGGVTNYA QMAVQSIDQNSWVNFYGNIGKTLLSLVSIFFDLVFMCQHYILYPENKAVPPKLNKEGTEPLIRFSEEPAAPENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.006G185000 [exp]	1.00	0.7852	Pt-EIF.4
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	2.00	0.7600
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	3.46	0.7205	Pt-ATGB2.1
AT1G55265			Protein of unknown function, D...		Potri.001G008320 [exp]	4.00	0.7316
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	5.74	0.7344
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	5.91	0.7229
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	6.32	0.6887	VAMP727.1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.014G113900 [exp]	6.92	0.6780
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.006G126700 [exp]	9.53	0.7098
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.008G020400 [exp]	13.74	0.6460

Compare expression of checked genes

Potri.017G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.