Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28030 789 / 0 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT1G01880 118 / 5e-27 5'-3' exonuclease family protein (.1.2) AT3G48900 94 / 3e-19 single-stranded DNA endonuclease family protein (.1.2) AT5G26680 69 / 1e-11 5'-3' exonuclease family protein (.1.2) AT1G29630 63 / 1e-09 5'-3' exonuclease family protein (.1.2.3) AT1G18090 50 / 1e-05 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142800 [exp] 108 / 1e-23 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.014G077300 [exp] 103 / 4e-22 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 71 / 3e-12 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 66 / 2e-10 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.002G152801 [exp] 46 / 0.0002 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039424 [exp] 550 / 9e-169 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10039423 [exp] 283 / 3e-86 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10027451 [exp] 124 / 6e-29 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10005744 [exp] 121 / 7e-28 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10036554 [exp] 112 / 4e-25 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10041375 [exp] 108 / 1e-23 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10000270 [exp] 74 / 3e-13 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10002782 [exp] 68 / 5e-11 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 68 / 6e-11 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 66 / 1e-10 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF00752 [poplar] [flax] XPG_N XPG N-terminal domain CL0464 [poplar] [flax] 5_3_exonuc_C PF00867 [poplar] [flax] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Potri.017G070500.1 pacid=42812954 polypeptide=Potri.017G070500.1.p locus=Potri.017G070500 ID=Potri.017G070500.1.v4.1 annot-version=v4.1 ATGGGAGTCCAAGGTCTGTGGGACTTGCTGGCTCCCGTCGGCCGTCGAGTATCCGTAGAAACTCTAGCCGGCAAGAAATTAGCCATCGATGCTAGTATAT GGCTGGTCCAGTTCATGAAGGCGATGAGAGACGACAAGGGAGAGATGGTACGGAACGCTCATTTGCTTGGCTTCTTTCGTCGAATTTGTAAGCTTTTGTA TCTCCGCACTAAGCCTGTCTTCGTCTTCGACGGTGCCACCCCTGCTCTCAAGCGCCGCACCGTCATCGCTCGTCGGAGGCTGCGAGAGAACGCCCAGGCT AAGATCCGCAAAACCGCTGAGAAATTGCTTCTTAATCAACTGAAGTCAATGAGGCTGAAAGAACTGGCAAAGGATCTTGAGAAGCAGAATGCTGCTAATA AGAAGGGCAAGCAGACGAAGATTTTGGAAGAGAATAAACGTGTGCTGTCTGAGTCCGAAAAGCTTGATGAAATGCTGGCAGCGTCCATTGCTGCTGAGGA AGGTGGGAGTTTAGATAACAATGCATCCACATCTGCTGCTGCTGCTGCTGCTTTGGAGGACATGGATAGCGATGGAGATGGAGATGAAGAGATGATTTTG CCACCAATGCATGAGGTTGAAGACCCAGCTGTCTTAGCTGCTTTGCCCCCATTAATGCAACTTGATCTTCTGATGAGAGAGAGATCATTTGCAGAAAAGG GAAAAAGTAATCAAGACAAGCAGTTGGAGAACCAGAATGACAAGCACAAAAATAATGCAAAGGGCAAGGAAATTTTGTCAGATCATACTGAATTTGAAGG GAGCAATATGGGAAGAGATCACGTGGCAGCAGAGAGTTACAATCAGGAGAAGTTAGACGAAATGTTGGCAGCATCTATGGTGGCTGAGGAGGAAGGCAGT GATGAAGATGAAGAGATGATACTGCCACATGGGAAGGTTGATCCTGCTGTTTTAGCAGCTCTGCCACCATCAATGCAACTTGATCTTCTGGTCCAGATGA GAGAGAAATTGATTGCTGAAAACAGACAAAGGTATCAAAAAGTCAAGAAGGTGCCCGAAAAATTCTCTGAGCTTCAAATTCAGGCTTATCTTAAAACTGT TGCTTTCCGTCGTGAGATAGATCAAGTGCAGAAAGCTGCTGCTGGGAATGATGTTGGTGGTGTTCAGGCTTCAAGGATAGCTTCTGATGCAAACCGAGAA TTTATTTTCTCATCATCCTTTTCTGGGGATAAAGAGTTGCTTACAACTGATGGAGTGAAGAGAAGAGAAGGACATGAGCAACAAAAGGAACCATTAAAGC AACCATCTTCAGATTTTGTGGCTGGTGTTGCATCTATCTGTAAGTCCAATACTGTGACAGGATTTTCCCAGGATGAATCTAGCAGTGCTTTTGATGATGA TGTTGAGACATATCTTGATGAAAGAGGTCGTATGCGAGTCAGTAGAGTCAGAGCCATGGGGATGCACATGACCCGTGATTTGCAAAGGAACTTGGATTTA ATGAAAGAAATTGAAAAGGAGAAAACGCTTTCTATCAAGACTCCAAGTGCTCGGTCTGTGCATAACAGAAATAAGATTGGTACCCCCAGATGTTTTCCCA ATGAAAATCATAATGGAGAAAGTTCACATGGTATCGATGGCAACTCCACTAACTTGAACAAGATGAACGAGCAGTCCTTGTTGAGTAATGAGACTTCTGT GCAGATATCATTTGAAGTTGGTGACGAGAGCAAGCATTTTAGCAGTGATGACGAAGTGTTTGCTTCTTTAGTAGCTGAAAAGCCTGTAAAAATCTCTTCT GCTGGCAATAGTACATCAAGAAGATATTCTGATGATTCTGCTTCTGATAGTGACTGGGAGGAAGGAATTGTTAAAGGAAAAGCTAATAGTTCTCCTAATG ATGTTGAATTAAGAACTAAGCTGTCTCCTAAGGTTAGCAATGTTAGCGATGATAGTGAAGTGGAATGGATGGAAGGAGATTCTGATATTCATGATAACTC CTCCTATCTAGCTGAATCAAAAAGAAAACTAGTTTCCAAAGGTACTTTGGAAGAAGAAGCTGCTTTGCAGGATGCTATTAGGAGAAGTCTTCATGATAAG TCCTCATATCCAGCTAAATCAAGAAATCAAGTTTCTGGAGGTTCTATAGAAGATGAGGCTGGTTTGCAGGATGCCATAATGAGAAGTCTTAATGATCTTG GGAGTGAAAAATCCATCCACTCAGAATCTGACCCTAAAAATGTTAAAAGCTCTAGAGGGCATGCTTATGAAGGTGTGGGCTTTCTCAATCAAGAAGATAA TGGTTCAGCTATGCTCAGGAAGGATGCTACCCAACAAAGCAAATCAATCTCTGAAATTTTGGGTTTTGAAAACCTAGGTGATGCAGGTGAAGTTAATATC TCACAAGCCTTTCCATCTGTGGGTAGCCAATTAAAGTCATCTAAAGCTCATAATCCTGATGATGTGGTGATGCTAATAAATGAATCACGTGAAAGTTATG TGCATTCTAATCCTGCCTGGATAAGCCAAGATGTGGATAAAAGGGAGAATGGGTGCCAAGGCATGCCATCTATTGAATCAATTGGCCCTTTGGAAGCAAA GGAGAACCACTTGAATTTGGAACCTGCTTCTGAAATTGAGAATGGTGGGTTATCTGCCTCCCATGAGAAGTATTCAAGAGATGGCTTTCATACCGCTATA GCAGCATCTACTTATCTACCTCTTACTGAGCTAATTGATGATAGAAATGATAAGAAAGCAGAGCCATCCATGTTCATTGGTGGAGAGAAAATTAGTTCTG AGGCTGAGCCACCATGCCTTTCAGTTGAGAACTCTTTCCCAGAAGATTCAGTGAATGGCAGTGATTTTGCAGAGAAACTTGATGGAGAAAAAAAAGCAGA AGACCATCTTAGTGAAAGGGAATGCTATATCAGCAAATCTGCATCCATGGATAATGAGAATGAACAGGTCAATTTTACAGAGGCTAGTTTGGAGAAGGAA ATGCTAATACTAGATCAAGAATATAGTAATCTAGGAGATGAACAGAGAAAGCTTGAGCGTAATGCGGAATCAGTCACCAGTGAGATGTTTGCAGAATGTC AGGAGCTGCTGCAGATGTTTGGCTTACCATATATTATAGCACCAATGGAAGCAGAAGCTCAATGTGCATATATGGAACTTGCAAATTATGTCGATGGTGC TGTGACTGATGATTCTGATGTCTTCTTGTTTGGAGCTCGAAATGTGTATAAGAATATATTTGATGATCGTAAATATGTGGAGACATACTTCATGAAGGAT ATCGAGAAAGAGCTTGGTCTATCAAGAGAGAGATTAATTCGCATGGCTCTGCTTCTTGGAAGTGATTATACCGAGGGAGTTAGTGGCATTGGCATTGTCA ATGCTATTGAGGTTGTGACTGCATTCCCCGAGGAGGATGGCCTTCAAAAATTCAGGGATTGGATTGAATCACCGGATCCAGCTATCCTAGGAAAGTTTGA TGTTCAAACTGGTCTGGGTGTGAGGAAAAAAGAGTCAAAGGTTGGTGGTAGTGAAGCAAAATGCACAGGTAATGGCATGGAAGGGACGAATCCATCTGGC CTAAACATTCCTCAAGCTCATGAAGAAAAGCAATCTGCAGATCATTCTCAAGTGATAAAGCAGGTTTTCATGGATAAGCATAGAAATGTGAGCAAGAACT GGCACATTCCTTCTTCTTTTCCGAGTGAAGCAGTCATTTCTGCGTATTCTTGTCCGCAAGTGGACAAATCAACTGAGCCTTTCACGTGGGGAAAACCAGA TCTTCATGCTCTTCACAGATTATGCTGGGAAAAGTTTGGGTGGCACATTCAGAAGTCAGATGAGTTGCTACTTCCTGTTCTGAAGGAGTATAATAAACAT GAGACTCAACTACGACTGGAAGCATTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATCAAGAAGGCTGTTAAAGGGATCACTGGAA ACCAATACTCTGACATGATGGATGATCCTGTGGAAGAAGTTTCTAAAAGTAGAACTGGAAATATATCTGGGAAATCTGGTGAAAATGAACCTCAGACACA TTCAAAGAGAACTGCAAGAACTGCTCCTGGCAATAAGAGTAGTTTTCTGGAAAAATCAAAACCAAAGTGGTCCAGGAAAAGGACTGCTGAGCAGCCTGTT TTTCCTGAAGTTGAGAATACAGAGGCAACTGTTAGGCCATGTAGCGATAGAGGATTCCTAAGAAATGGAAAAGGTAGAGGGAGAGGTCGGGGAAGAGGAA GGGGAAGGGGAAAGGCAAATCTTTGTTTTGAACAATCAGATTCAAGCTCTTGTGATGTTGATAGTGGTCATGATGAGCATGAAGTGCATGTTGATGAGTC AAGTGGCCCACATGAATTGCGGAAGTCAACACGGTTGCGGAAGCCTGTAAATTACACAGTCGATGACTTAGAAATTGATGATGTGGAGAAGTCCTTGGAC CAGGGTGATAAAGAGGGGTTTGACAAAGAGGCACTGCATCAAGGTTTCTCTTCTTCTCAAGAAGCACGTGGAGATGGTGGCATTGGCATCAAAGACAATG AACAACTTGAAGTGGGAGATTCTTCACTTCAGAGCTTCTCCAGGGATTATCTTGAAGGGGGAGATGGATTTTGCTTTGATGGAGAGGAAGTTGGTGTCCC TGGCGTGGACCGAAATAGCTATTTTTCAAAGGTTGAACTTTCTGATGATCACCTTGAAAGGGGAGGTGGTTTTTGCCTGGACGAAAGTGACGCAGGCATG GACCAAGGCACTAACCAAAACCCACCTACAACGGGTGATCTTTTGGAAGATGTTGAGCATGGCACTGAGCTCTTGAATGAGGTCAGAGATGGAGGGAGGA CGAGTGCTTGTGAAACTGAGTTGAATGCAGACAGCGTGGTTGCAGCAGCACATGCTGGTGGTCATTTAAGGAGCAGCGTCTCTGGCCCAGAAATAACTAA GAATGAGACGGGGGCAACTGGTGGTGCAGGAAGTCTAAGTGCAATGCCGTACCTGCTTAAAAGAAAACGGAGGAAAATGTGA
AA sequence Show only first row Show all	>Potri.017G070500.1 pacid=42812954 polypeptide=Potri.017G070500.1.p locus=Potri.017G070500 ID=Potri.017G070500.1.v4.1 annot-version=v4.1 MGVQGLWDLLAPVGRRVSVETLAGKKLAIDASIWLVQFMKAMRDDKGEMVRNAHLLGFFRRICKLLYLRTKPVFVFDGATPALKRRTVIARRRLRENAQA KIRKTAEKLLLNQLKSMRLKELAKDLEKQNAANKKGKQTKILEENKRVLSESEKLDEMLAASIAAEEGGSLDNNASTSAAAAAALEDMDSDGDGDEEMIL PPMHEVEDPAVLAALPPLMQLDLLMRERSFAEKGKSNQDKQLENQNDKHKNNAKGKEILSDHTEFEGSNMGRDHVAAESYNQEKLDEMLAASMVAEEEGS DEDEEMILPHGKVDPAVLAALPPSMQLDLLVQMREKLIAENRQRYQKVKKVPEKFSELQIQAYLKTVAFRREIDQVQKAAAGNDVGGVQASRIASDANRE FIFSSSFSGDKELLTTDGVKRREGHEQQKEPLKQPSSDFVAGVASICKSNTVTGFSQDESSSAFDDDVETYLDERGRMRVSRVRAMGMHMTRDLQRNLDL MKEIEKEKTLSIKTPSARSVHNRNKIGTPRCFPNENHNGESSHGIDGNSTNLNKMNEQSLLSNETSVQISFEVGDESKHFSSDDEVFASLVAEKPVKISS AGNSTSRRYSDDSASDSDWEEGIVKGKANSSPNDVELRTKLSPKVSNVSDDSEVEWMEGDSDIHDNSSYLAESKRKLVSKGTLEEEAALQDAIRRSLHDK SSYPAKSRNQVSGGSIEDEAGLQDAIMRSLNDLGSEKSIHSESDPKNVKSSRGHAYEGVGFLNQEDNGSAMLRKDATQQSKSISEILGFENLGDAGEVNI SQAFPSVGSQLKSSKAHNPDDVVMLINESRESYVHSNPAWISQDVDKRENGCQGMPSIESIGPLEAKENHLNLEPASEIENGGLSASHEKYSRDGFHTAI AASTYLPLTELIDDRNDKKAEPSMFIGGEKISSEAEPPCLSVENSFPEDSVNGSDFAEKLDGEKKAEDHLSERECYISKSASMDNENEQVNFTEASLEKE MLILDQEYSNLGDEQRKLERNAESVTSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANYVDGAVTDDSDVFLFGARNVYKNIFDDRKYVETYFMKD IEKELGLSRERLIRMALLLGSDYTEGVSGIGIVNAIEVVTAFPEEDGLQKFRDWIESPDPAILGKFDVQTGLGVRKKESKVGGSEAKCTGNGMEGTNPSG LNIPQAHEEKQSADHSQVIKQVFMDKHRNVSKNWHIPSSFPSEAVISAYSCPQVDKSTEPFTWGKPDLHALHRLCWEKFGWHIQKSDELLLPVLKEYNKH ETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGNQYSDMMDDPVEEVSKSRTGNISGKSGENEPQTHSKRTARTAPGNKSSFLEKSKPKWSRKRTAEQPV FPEVENTEATVRPCSDRGFLRNGKGRGRGRGRGRGRGKANLCFEQSDSSSCDVDSGHDEHEVHVDESSGPHELRKSTRLRKPVNYTVDDLEIDDVEKSLD QGDKEGFDKEALHQGFSSSQEARGDGGIGIKDNEQLEVGDSSLQSFSRDYLEGGDGFCFDGEEVGVPGVDRNSYFSKVELSDDHLERGGGFCLDESDAGM DQGTNQNPPTTGDLLEDVEHGTELLNEVRDGGRTSACETELNADSVVAAAHAGGHLRSSVSGPEITKNETGATGGAGSLSAMPYLLKRKRRKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	0	1
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	1.41	0.8652	Pt-TOR.1
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	2.00	0.8842
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.005G151500 [exp]	2.00	0.8529
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	2.44	0.8403
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	3.00	0.8538
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.003G162700 [exp]	5.83	0.8169	AML1.9
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.008G027000 [exp]	6.32	0.7815
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	6.63	0.8328
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	7.21	0.8300
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	7.93	0.8369

Compare expression of checked genes

Potri.017G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.