Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46610 780 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G14350 155 / 7e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 144 / 6e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 144 / 8e-36 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 145 / 1e-35 PGR3 proton gradient regulation 3 (.1) AT1G62670 143 / 2e-35 RPF2 rna processing factor 2 (.1) AT1G09900 139 / 3e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62590 137 / 1e-33 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 137 / 1e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 135 / 4e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 141 / 4e-35 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 139 / 3e-34 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G105400 [exp] 138 / 2e-33 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 136 / 5e-33 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 133 / 8e-32 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 128 / 3e-31 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 129 / 5e-31 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G297300 [exp] 130 / 7e-31 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 129 / 1e-30 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032109 [exp] 674 / 0 AT3G46610 665 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014577 [exp] 671 / 0 AT3G46610 663 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10034616 [exp] 135 / 2e-32 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 134 / 3e-32 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 132 / 2e-31 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 131 / 3e-31 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 128 / 3e-30 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10002107 [exp] 128 / 3e-30 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 127 / 7e-30 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10013894 [exp] 127 / 8e-30 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G070800.3 pacid=42813231 polypeptide=Potri.017G070800.3.p locus=Potri.017G070800 ID=Potri.017G070800.3.v4.1 annot-version=v4.1 ATGCAAACTTTGAGTGTTTGGCCGTTGAGTGGTGGCTCTTGTGCGGTGCCCCATTTGGAGTTTGAGGAGGATTCTTCTTGTTTTTTAAGTACTAGAAGAG GGATAAAGAGATGGGGTCTCGTTGACAATGTTTTTCAAGGTGCAAGTTCTGGTTTTCCTATGGTTTCTGGCGATTTGAGGTATGATAGAAGTGGGACTTC TTGTGGGAGCTTAAAATTTGGTGTGGAAAGTAGGTTTCTCTCCAATCATTCAAAGATTAAATATGTGTGTTTTCGTGAAACGAAGGAAGGCTCATTTGGT TCATCATTGGCTTTGGCATCGGCTTTGGAGCAACAAAAAATTGGTAATGAATTTCATAGAGTAGAATCAAGTTTGGATGATCGGTCATTAGTGAAACATG AGAGAGATAAAGTTGATTATGATTTCGATAGAATTGATGATAATAGTGATGAAGAACAAAAATGTGAAGTAGATGTTGGAAGTGAGGGAGAAGCTGGGGA AGAACGGGATGAAAAGATTGATGTCCCTGCGCTCGCTCAGAGCTTATATTTTGCAAAAACAGTGGATGATATAGAAGAGGTTCTTAAGGACAAGGGTGAA TTGCCAGTTCAAGTTTACTTATCCATGATTAAGGGTTTTGGATGGGACAAGAAAATGGAGCCTGCAATAGCTCTTGTTGATTGGCTCAAGATAAAGAAAG AAACAGATGGTACTATTGTTCCAAATCTTTTCATATATAATAGTCTATTAAGTGCAGTGAAACAGTCTGAACAATATGAAGAAACGGAAAAAATCTTGGA AAGAATGACTCAGGAGGGGGTTGCTCCCAATGTGGTGACTTACAACATTTTGATGGTTATTTATGTCAAGCAAGGACAGGCTAAAAAGGCCCTTGATGTT CTTGAAGAGATGCGTAGGAATGGTTTTACCCCATCTGCTGCATCCTATTCTTCTGCTCTGTTGGCTTATAGAAAAATGGAAGACGGGGATGGAGCTCTCA AGTTCTTTGTAGAAATAAAAGACAAGTATATGAAAGGGGAAATAGGAAAGGATGCTGATGAAGATTGGGAAAGGGAATATGTTAAGCTCGAAAATTTCAC AATTCGTGTTTGCTACCAGGTTATGAGGCGGTGGCTTGTGAGGCTTGAAAACTTGAACACCAATGTGTTAAAGCTTCTGACAGATATGGATAAGGCCGAA CTTCAACCTGGTCGGTCAGATTATGAGCGCCTTGTGTGGGCTTGTACCCGTGAAGAACATTATGTTGTTGCAAAAGAATTGTACATTAGGATTAGAGAAA GGTGCTCTGATATAAGCTTATCAGTCTGCAACCATGTGATTTGGTTGATGGGAAAGGCTAAGAAGTGGTGGGCTGCCTTGGAGGTTTACGAGGATTTGTT AGACAAGGGTCCAAAGCCAAATAACCTTTCATACGAATTGATTGTTTCATACTTTAATGTCCTACTTACTGCAGCTAAGAAGAGAGGAATTTGGAGATGG GGTGTCAGGTTGCTAAACAAGATGGAAGAGAAAGGCCTGAAGCCAGGAAGCAAGGAATGGAATGCAGTTCTTGTCGCTTGTTCCAAGGCTTCAGAAACAG CTGCTGCTGTTCAGATATTTAGAAGAATGGTTGAACAAGGTGAAAAGCCTACAGTTATCTCCTATGGAGCACTGCTTAGTGCCCTTGAAAAGGGTAGACT GTATGATGAGGCTGTCCGTGTATGGGAGCATATGCTTAAGGTGGGTGTCAAGCCCAACGTGTATGCATACACTATTATGGCTTCGGTTTTCACTAGACAA GGGAATTTTAGACTGGTTGATGCAATAATCAATGAAATGGTTTCAACTGGTATTGAGCCAACTGTTGTTACATATAATGCAATAATCAGTGGATGTGCTC GTAATAATTTGAGCAGTGCAGCATATGAATGGTTTCACCGCATGAAAGTCCAGAACATCTCACCAAACGAAATTACATATGACATGCTGATTGAGGCTCT TGCAAAGACTGGCAAACCGAGACTTGCATATGAGTTGTATTTGAGGGCTCAAAATGAAGACCTTCAACTCTCTCCGAAGGCTTATGATGCAGTTATGCAT TCCTCTGAAGCTTATGGGGCTACTATTGACACAAGTGTTTTAGGACCTCGGCCACCAGATAAAAAGAAGAAAGTTCAAATCAGGAAGACTTTGACCGAAT TCTGTAATTTGGCTGATGTTCCACGGAGAAGCAAACCATTTAACAAGAAGGAAATTTATGCCTCACAAGCAGAAGGAAAACAATGA
AA sequence Show only first row Show all	>Potri.017G070800.3 pacid=42813231 polypeptide=Potri.017G070800.3.p locus=Potri.017G070800 ID=Potri.017G070800.3.v4.1 annot-version=v4.1 MQTLSVWPLSGGSCAVPHLEFEEDSSCFLSTRRGIKRWGLVDNVFQGASSGFPMVSGDLRYDRSGTSCGSLKFGVESRFLSNHSKIKYVCFRETKEGSFG SSLALASALEQQKIGNEFHRVESSLDDRSLVKHERDKVDYDFDRIDDNSDEEQKCEVDVGSEGEAGEERDEKIDVPALAQSLYFAKTVDDIEEVLKDKGE LPVQVYLSMIKGFGWDKKMEPAIALVDWLKIKKETDGTIVPNLFIYNSLLSAVKQSEQYEETEKILERMTQEGVAPNVVTYNILMVIYVKQGQAKKALDV LEEMRRNGFTPSAASYSSALLAYRKMEDGDGALKFFVEIKDKYMKGEIGKDADEDWEREYVKLENFTIRVCYQVMRRWLVRLENLNTNVLKLLTDMDKAE LQPGRSDYERLVWACTREEHYVVAKELYIRIRERCSDISLSVCNHVIWLMGKAKKWWAALEVYEDLLDKGPKPNNLSYELIVSYFNVLLTAAKKRGIWRW GVRLLNKMEEKGLKPGSKEWNAVLVACSKASETAAAVQIFRRMVEQGEKPTVISYGALLSALEKGRLYDEAVRVWEHMLKVGVKPNVYAYTIMASVFTRQ GNFRLVDAIINEMVSTGIEPTVVTYNAIISGCARNNLSSAAYEWFHRMKVQNISPNEITYDMLIEALAKTGKPRLAYELYLRAQNEDLQLSPKAYDAVMH SSEAYGATIDTSVLGPRPPDKKKKVQIRKTLTEFCNLADVPRRSKPFNKKEIYASQAEGKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	0	1
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	1.00	0.9883
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	2.00	0.9782
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	3.16	0.9797	Pt-CLPR1.1
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	4.00	0.9762	Pt-CTF2.2
AT3G27110			Peptidase family M48 family pr...		Potri.001G330800 [exp]	5.09	0.9735
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	5.91	0.9763
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	6.48	0.9767	CCD1.5
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	7.14	0.9790	RPL1.2
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	8.94	0.9779
AT5G55710		AtTic20-V	translocon at the inner envelo...		Potri.004G191700 [exp]	11.87	0.9630

Compare expression of checked genes

Potri.017G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.