Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40610 612 / 0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G40690 114 / 3e-28 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G41540 68 / 4e-12 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3) AT3G07690 58 / 4e-09 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090900 [exp] 114 / 4e-28 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.016G043400 [exp] 68 / 3e-12 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.006G046900 [exp] 65 / 3e-11 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.003G203800 [exp] 64 / 7e-11 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014889 [exp] 636 / 0 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10022308 [exp] 634 / 0 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10029028 [exp] 106 / 4e-25 AT2G40690 625 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10034238 [exp] 96 / 2e-21 AT2G40690 536 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10031052 [exp] 81 / 3e-16 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10035438 [exp] 77 / 5e-15 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10016364 [exp] 60 / 1e-09 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 57 / 2e-08 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01210 [poplar] [flax] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CL0106 [poplar] [flax] 6PGD_C PF07479 [poplar] [flax] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.017G070900.2 pacid=42813819 polypeptide=Potri.017G070900.2.p locus=Potri.017G070900 ID=Potri.017G070900.2.v4.1 annot-version=v4.1 ATGGCTCCTCCTGCTGCCATGGAAGAAACTGCACCAACTATTAACCTTCTCTCCAATATTAATGATGGTAATAATGCTGCTTCACAGATATCTAGAGTCA CTGTTGTTGGCAGTGGCAATTGGGGTAGTGTTGCCGCTAAGCTCATTGCTTCTAACACCCTCAAGCTTGCTTCTTTTCATGATGAAGTGAGGATGTGGGT GTTTGAGGAGACATTGCCAACTGGTCAGAAGCTCACCGAGGTCATCAATCAAACCAATGAAAACGTAAAATATCTCCCTGGCATAAAGCTTGGCAAAAAC GTAGTTGCGGACCCTGACCTTGATAATGCAGTGCGGGATGCAAAGATGTTGGTATTTGTGACCCCACATCAATTCATGGACGGTATATGCAAGAGACTTG TCGGAAAGCTAAAGGAAGATGTGGTGGCTATTTCACTCATCAAAGGCATGGAGGTCAAGATGGAAGGTCCACACATGATTTCCACTCTCATCTCTGAGCA GCTCAGGGTTAATTGTTGTGTGCTGATGGGAGCAAACATTGCAAATGAGATTGCTGTCGAGAAGTTCAGTGAAGCAACAGTTGGATACAGAGAAAACAGA GAAGTTGCAGAAAAATGGGTTCGGTTATTTAGTACCCCTTATTTCGTGGTCACACCTGTTCAAGATGTGGAGGGAGTTGAACTGTGTGGGACTTTGAAGA ATGTTGTGGCTTTAGCAGCAGGTTTTGTGGACGGTCTGGAAATGGGAAATAACACGAAGGCTGCGATAATGAGAATTGGTCTAAGGGAGATGAGAGCCTT TTCCAAATTACTGTTTTCCTCTGTTAAGGACAGCACATTCTTTGAAAGCTGCGGTGTAGCTGATCTCATCACAACATGCTTGGGAGGAAGAAACAGGAGA GTTGCAGAGGCTTTTGCTAAGAATGGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGTTGCAGGGCCAAAAGTTACAGGGTGTCTCAACTGCAA GAGAAGTTTATGAAGTTTTAAGGCACCGTGGATGGCTAGAGCTCTTTCCACTTTTTGCAACAGTACATGAGATCTCCGCTGGACGTCTTCCACCATCAGC TATAGTAGAATATAGCGAGCACAAGCCTAACTGCTCCCTGGTGTAA
AA sequence Show only first row Show all	>Potri.017G070900.2 pacid=42813819 polypeptide=Potri.017G070900.2.p locus=Potri.017G070900 ID=Potri.017G070900.2.v4.1 annot-version=v4.1 MAPPAAMEETAPTINLLSNINDGNNAASQISRVTVVGSGNWGSVAAKLIASNTLKLASFHDEVRMWVFEETLPTGQKLTEVINQTNENVKYLPGIKLGKN VVADPDLDNAVRDAKMLVFVTPHQFMDGICKRLVGKLKEDVVAISLIKGMEVKMEGPHMISTLISEQLRVNCCVLMGANIANEIAVEKFSEATVGYRENR EVAEKWVRLFSTPYFVVTPVQDVEGVELCGTLKNVVALAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRR VAEAFAKNGGKRSFDELEAEMLQGQKLQGVSTAREVYEVLRHRGWLELFPLFATVHEISAGRLPPSAIVEYSEHKPNCSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	0	1
AT4G12070			unknown protein		Potri.018G050100 [exp]	4.00	0.7692
AT1G52190			Major facilitator superfamily ...		Potri.012G087500 [exp]	14.62	0.8158
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	14.83	0.7571
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	17.54	0.7813	Pt-HA1.5
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.001G248600 [exp]	19.59	0.7525
					Potri.006G089451 [exp]	21.16	0.8146
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067600 [exp]	25.09	0.7472
					Potri.010G001200 [exp]	29.39	0.7223
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	42.24	0.7349
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.012G093900 [exp]	42.74	0.7638

Compare expression of checked genes

Potri.017G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.