Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27440 706 / 0 UKL5 uridine kinase-like 5 (.1) AT1G55810 670 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 667 / 0 UKL4 uridine kinase-like 4 (.1.2) AT5G40870 640 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 639 / 0 UKL2 uridine kinase-like 2 (.1) AT1G32060 93 / 2e-20 PRK phosphoribulokinase (.1) AT1G26190 91 / 4e-19 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 84 / 4e-17 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 67 / 1e-12 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT2G01460 43 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467800 [exp] 686 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 677 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G069600 [exp] 650 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 649 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.003G099400 [exp] 88 / 1e-18 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.001G134000 [exp] 85 / 1e-17 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.008G110500 [exp] 84 / 5e-17 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 83 / 9e-17 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 80 / 8e-16 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041569 [exp] 637 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 637 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10022289 [exp] 634 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10021310 [exp] 599 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 599 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10032051 [exp] 545 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10011060 [exp] 87 / 9e-19 AT1G32060 624 / 0.0 phosphoribulokinase (.1) Lus10000674 [exp] 87 / 2e-18 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10009040 [exp] 84 / 7e-17 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 83 / 1e-16 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain CL0533 [poplar] [flax] PRTase-like PF14681 [poplar] [flax] UPRTase Uracil phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.017G071200.1 pacid=42813429 polypeptide=Potri.017G071200.1.p locus=Potri.017G071200 ID=Potri.017G071200.1.v4.1 annot-version=v4.1 ATGGATTCTGAAACCTTATCTACACTTAATAACAACATCAAAAATCACTTGCCAGTCCAGTCAAATGGCTTGATATCAGCTCCAGACCCTCCTCAGCAGC CATTTGTAATTGGTGTTGCTGGAGGTACTGCATCCGGGAAAACAACTGTGTGTAATATGATTATTTCTCAGCTCCATGATCAACGCGTTGTTCTTGTCAA TCAAGATTCATTTTATCACTCCCTGAGTGACTATGCATTGGCACAAGTTTATGATTATAACTTTGATCATCCTGATGCCTTCAATACAGAACTTCTCCTT TCATGCATGGAGAAATTGAAAAATGGACGGGCAGTTGACATACCAAATTATGATTTCCAGACCCATAAAAGAATCGGTCCAGGATGGAAGGTTAACCCTT CAGACATCATCATTTTAGAAGGAATTCTAGTTCTCCACGATCCTCGGGTTCGTGATCTAATGAACATGAAGATCTTTGTTGACACAGATTCTGACCTGCG ACTTGCACGGAGAATTCAGCGCGATACTGTTGAAAGAGGGAGGAATATCCAGAACGTTCTTGACCAATACGCTCGATCTGTAAAGCCAAGTTTTGAAGAA TTTATATTGCCATCAAAAAAATATGCTGACGTTATAATCCCTCGGGGAGGAGATAATGATGTCGCGATTGACTTGATAATACAACATATCCGTGCAAAGC TTGGCCAGCATCATTTGTGTAAAATATATCCAAATGTTTCAGTTATACACTCAACATTTCAGATGCGGGGAATGCACACACTCGTACGTGATGTCAAGAC AACGAAGCATGACTTTGTCTTCTATGCAGACCGACTAATACGCTTGGTTGTGGAGCATGGTCTAGGTCATCTTCCATTCACAGAAAAACAGATCACAACC CCAACAGGATCTGTATACCCTGGAGTTGTTTTCTGCAAAAGATTGTGTGGGGTCTCAGTCATTAGAAGTGGGGAGAGCATGGAAAATGCATTAAGAGCAT GCTGCAAGGGCATCAAAATCGGTAAAATTCTCATCCATGGAGAGGGTAACAATGGACGGCAGTTAATCTATGAGAAGCTACCCGCAGACATCTCAAGTCG ACATGTTTTATTGCTCGATCCAGTTCTTGCTTCAGGAAATTCTGCAGTCAAAGCTATTAACCTGCTTCTCAGCAAGGGCGTCGTAGAGTCTAACATCATC TTCCTTAATCTAATAGCAGCACCCCAAGGAATACATGTGGTTTGCAAGAAATTTCCAAAGCTCAAAATTGTGACATCGGAGATTGATGTAACATTGGATG AGGATTTATGTGTTATCCCAGGGATGGGAGAGTTTGGGGACCGTTATTTCGGCACAAACAATTAG
AA sequence Show only first row Show all	>Potri.017G071200.1 pacid=42813429 polypeptide=Potri.017G071200.1.p locus=Potri.017G071200 ID=Potri.017G071200.1.v4.1 annot-version=v4.1 MDSETLSTLNNNIKNHLPVQSNGLISAPDPPQQPFVIGVAGGTASGKTTVCNMIISQLHDQRVVLVNQDSFYHSLSDYALAQVYDYNFDHPDAFNTELLL SCMEKLKNGRAVDIPNYDFQTHKRIGPGWKVNPSDIIILEGILVLHDPRVRDLMNMKIFVDTDSDLRLARRIQRDTVERGRNIQNVLDQYARSVKPSFEE FILPSKKYADVIIPRGGDNDVAIDLIIQHIRAKLGQHHLCKIYPNVSVIHSTFQMRGMHTLVRDVKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQITT PTGSVYPGVVFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHGEGNNGRQLIYEKLPADISSRHVLLLDPVLASGNSAVKAINLLLSKGVVESNII FLNLIAAPQGIHVVCKKFPKLKIVTSEIDVTLDEDLCVIPGMGEFGDRYFGTNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	0	1
AT3G54880			unknown protein		Potri.010G227800 [exp]	1.73	0.9426
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	1.73	0.9334
AT3G13275			unknown protein		Potri.001G469401 [exp]	2.44	0.9373
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	7.34	0.9001
					Potri.008G115533 [exp]	8.36	0.9174
AT1G18290			unknown protein		Potri.012G045600 [exp]	8.48	0.9140
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	10.95	0.8819
AT3G21710			unknown protein		Potri.011G135700 [exp]	12.48	0.8848
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Potri.005G227500 [exp]	14.38	0.8034	Pt-RIC6.1
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	17.23	0.8679

Compare expression of checked genes

Potri.017G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.