Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14530 558 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G66240 317 / 3e-107 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G02730 76 / 3e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 73 / 4e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 71 / 1e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 61 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 60 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 57 / 7e-09 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G64730 56 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G27640 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345900 [exp] 667 / 0 AT5G14530 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 324 / 4e-110 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.002G051900 [exp] 81 / 5e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 78 / 5e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 72 / 1e-13 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 68 / 1e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 59 / 3e-09 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 58 / 4e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 56 / 2e-08 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014558 [exp] 605 / 0 AT5G14530 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021575 [exp] 328 / 7e-112 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10017157 [exp] 330 / 7e-111 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10032128 [exp] 285 / 2e-96 AT5G14530 260 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 80 / 1e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 80 / 1e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 67 / 3e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 61 / 8e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018081 [exp] 60 / 1e-09 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 60 / 1e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.017G071900.1 pacid=42813726 polypeptide=Potri.017G071900.1.p locus=Potri.017G071900 ID=Potri.017G071900.1.v4.1 annot-version=v4.1 ATGATGTCGCTTACAGAGCTCGATGATGATACGGTGCGCAGTATGTCTATCGGAGCTGTTTTCTCCGACTTTGGAGGGAAGATTAATTCAGTTGATTTTC ATCGAAAAGACGATCTGTTAGTTACAGCTAGCGAGGATGATTCGGTTCGTCTTTACGACATTGCAAGTGCCAAATTGCTGAAGACTACATATCACAAGAA ACACGGTACAGATCGAATATGTTTCACGCACCACCCTAGCTCCGTTATTTGTTCCTCAGTATACCATTTAGATTCTACCGGAGAATCATTACGTTATCTA TCATTGTATGATAATCGATGTCTTCGCTACTTCAAAGGCCATAAAGACAAGGTTGTTTCGCTCTGCATGTCTCCAATTAATGATAGCTTCATGTCCAGCT CTCTTGACCACAGCATTAGAATATGGGATCTTCGCGTAAATGCCTGCCAGGGAATTTTGCATTTACGCGGTAGACCCACAGTTGCATACGACCAGCAAGG TCTTGTCTTTGCTGTGGCAATGGAAGGGGGTGCTATTAAACTGTTTGATTCACGATCCTATGACAAGGGTCCCTTTGACACCTTTTTAGTTGGTGGAGAT ACAGCTGAGGTTTGTGATATTAAATTCAGCAATGATGGTAAATCAATGCTATTGACTACCACAAGTAACAACATCTATGTTCTTGATGCATATGGTGGAG ATAAGCGATGTGGCTTCAGTTTGGAACCATCTCCCAGTACAACTATAGAGGCTACTTTTACCCCAGATGGCCAATATGTGGTATCAGGCTCAGGAGATGG AACCCTGCATGCCTGGAACATCAACATGCAAAATGAGGTGTCATGCTGGAACAGTCACATAGGCATTGCATCATGCTTGAAATGGGCTCCTCGTCGTGCC ATGTTCGTTGCTGCCTCTACTGTTCTAACGTTTTGGATACCTGACAGCTCAAAACCAACTGTCGATCCTCGTCCCATGGACACTGAAGGTGCAGCTCCAT CTGAACATGTACCTCAACAATGA
AA sequence Show only first row Show all	>Potri.017G071900.1 pacid=42813726 polypeptide=Potri.017G071900.1.p locus=Potri.017G071900 ID=Potri.017G071900.1.v4.1 annot-version=v4.1 MMSLTELDDDTVRSMSIGAVFSDFGGKINSVDFHRKDDLLVTASEDDSVRLYDIASAKLLKTTYHKKHGTDRICFTHHPSSVICSSVYHLDSTGESLRYL SLYDNRCLRYFKGHKDKVVSLCMSPINDSFMSSSLDHSIRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGD TAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGDKRCGFSLEPSPSTTIEATFTPDGQYVVSGSGDGTLHAWNINMQNEVSCWNSHIGIASCLKWAPRRA MFVAASTVLTFWIPDSSKPTVDPRPMDTEGAAPSEHVPQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14530			Transducin/WD40 repeat-like su...		Potri.017G071900 [exp]	0	1
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	9.53	0.7633
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	11.48	0.7174	Pt-CCR.7
AT5G63220			unknown protein		Potri.010G217400 [exp]	12.96	0.6300
AT2G40020			Nucleolar histone methyltransf...		Potri.010G190800 [exp]	13.03	0.6935
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	27.20	0.7075	CLC.3
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Potri.006G035900 [exp]	32.40	0.6677
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	35.46	0.6443
AT1G72880			Survival protein SurE-like pho...		Potri.001G196800 [exp]	42.33	0.6159
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	43.41	0.6570
AT1G53760			unknown protein		Potri.001G161800 [exp]	43.79	0.6516

Compare expression of checked genes

Potri.017G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.