Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 606 / 0 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT1G49600 49 / 2e-05 ATRBP47A RNA-binding protein 47A (.1) AT3G19130 47 / 5e-05 ATRBP47B RNA-binding protein 47B (.1) AT4G27000 47 / 6e-05 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47490 47 / 7e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT1G11650 46 / 8e-05 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47500 46 / 0.0001 ATRBP47C' RNA-binding protein 47C' (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351532 [exp] 1301 / 0 AT3G27700 612 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.004G143400 [exp] 50 / 4e-06 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 49 / 1e-05 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 48 / 3e-05 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 47 / 5e-05 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.008G196700 [exp] 42 / 0.001 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032140 [exp] 770 / 0 AT3G27700 613 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014548 [exp] 763 / 0 AT3G27700 593 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014547 [exp] 761 / 0 AT3G27700 623 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032139 [exp] 750 / 0 AT3G27700 588 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10012071 [exp] 51 / 2e-06 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 51 / 3e-06 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 50 / 4e-06 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 48 / 2e-05 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10005986 [exp] 44 / 0.0004 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019889 [exp] 44 / 0.0007 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.017G072100.5 pacid=42813250 polypeptide=Potri.017G072100.5.p locus=Potri.017G072100 ID=Potri.017G072100.5.v4.1 annot-version=v4.1 ATGGAGCTGAAAGTTTCAACACTAAAGACAGGTGGTCTTTCTCCTGCTGATTGCATTAGCGATCCTGAGGAGAAGGAAGTCAGTGATGAGGATGATGATG ATCGCAACCATAAGCATCGTAGACGGGAGATACGTTCTCAATCTTTGGAGAGAGATTCTCTGGAACCAGTTTTCACAAGGCCATACAGGAAGCGTAACAA ACCATTTGAAAATGGGCAATTTTACCAGGAAAATGACTATAACTCTGTTCCTCTTGAGAAAGGCTTTGCCACAAAGTTTGAAAGAATACGACCTGGCTTG GTGTCATTACCTCGAATGCCTGTGGATTGGAATCAAAGAATCAGGTCAAACCAAACATTTTATGGAGATCCTGGTCTTGGCAGGGGAAGAGGAAGGGAGC CTGTTTCTTGGAGCCAACATGATTCTAGGTTCAGCCCAGTTGACATTGCTTCTCAAATGGTTCACCAGGGGCAGAGCCTCTTTACTGGGAGGGGTTTGGC AAATGTTTCAAATGCGCAGAGTGCATCCTGGAATGCATATGGTTTATTTCCAGGAATACCAAATGGTGGCCTGGATAAACTCCGTCCCATTGGTTTGCAA GCAACTCTCAGACCAGCAGTAACTTCTTCATTGAACATGGGCATTCCTCAACAAAGGTGTAGAGACTTTGAGGAGCGTGGATTTTGTCTAAGAGGGGACA TGTGTCCAATGGAGCATGGTGTCAATCGTATTGTTGTTGAAGATGTTCAGAGCCTTTCACAGTTTAATCTCCCTGTTTCACTTCCACGTGCCCAACTAGT TGGAACAACTGCTAGACCGGGGGCTCTACCAACTGTTGGTGCCCCTTCAGCCACATTGATAAATAGCAAAGGAATGCATAGCAAATGTAACAAGCCTGGA ATAGTCAATGCTGGATTGGGCTTCAATGGTGCACATACTGGTTCTGCTAGTGTGAGTGGAGGAGACTTGTATGATCCAGATCAACCCCTGTGGAATGACA GTGTTCCTGAAACTTCAAGTGCACTCATAGCACCACATTCACCTAAAATTGATGAAATTGAATCCATGATAAGTATTGATTCTTTTGATCACAATCATGT CAGTTTACGTGGTGGTGCTGATAATGAATGCCCAATTAGAAGCACTGGGATTGCTGTGCATTCAGAGAGTTTGAATTCTTCTGTTTGGGGTAAAGTCAGG GCTTCGAACAATAGATTACATGTGAAAGAGAAAACCGATTTGACTGTAAGTATGTTAAATAATATGGAGAGTGAGTCCAAGGAAAATCAGGGTGCATTAG CCAATGTTCGTGGTACTTCCCGTCAAGGAAAACAAATTAATTTTGAGGATTCTAGCGCAAAAACCATAGATTCACCTGCCAAGACACAAAGCAACACCAT GCGCCACACACCAAAACCATCTCAAAAGGCACTGCGTACACTATTTGTCAATGGCATTCCACAGAAAAGCAACAAAAGAGAGGCTCTACTTTCTCATTTT CAAAAATTTGGAGAGGTTATTGACATTTATATTCCATTGAACACTGAGCGAGCATTTGTTCAATTCTCAAAAAGGGAAGAGGCAGAAGCTGCTCTAAGGG CACCTGATGCTGTAATGGGCAACCGTTTTATCAGGCTGTGGTGGGCTAATCGTGATAGCATTCCTGATGGTGGCGCTGGCAGTAGCAATAGTGTATCTGT CACACCCCGGGGTGTGACTTCTACTTCATTTCCACCCCATCTGCCTATTGGTAACAGTGGAAAAGATAATCTTCAGTTGTCTGTTTCAAAGGCTACTGCT GTTCCTCCCTCTGTTGCTCCTGTCCCTGCCATCGATCACTCTAAGGTCATCACGACAAATGTTCCAAAGGTTCCACCTCCTATGCAGAAGCTAGAGAGTT TAGAACAATTGAAGGAGGAGCTGCGCAAGAAGCAGGAGCTGCTGGATCAGAAGCGGAATGACTTTCGGCGTCAGTTGGACAAGCTTGAGAAACAAGCTAC AGGAGTCAAGGGTGAGGTAACAGCAGAGCCTGCTTCAAAGAGACACAAAACTGGAATACCAGCATCTGATATTGTCAAAGCTGCTACTCCGAGGTCTGCT GATCCAGGTTCTGCGTCCCCACATGCTGAAATGGTGGATAAGAACAAAACAGTGGAGAATGTTGTGTCATCTAGTAGCAAAACATGTGTAATGATGGCTC TGCAGGATTCTGCAGGCTCAAAGCCATCAATTCATCCTTTAGCACCTGTTGGGCCTCCTTTTCTGATGAATAAATACAAGTTGGACAACCGACCTACAGC ATTCAAAATTATTTCACCTTTACCAGCTGGTTTGGCAAATGTTGCTACTTTAAAGGAATATTTCTCATCATATGGCGATCTTTCTGCTGTGGAACTAGAA GATGAGCCTAGTGATTATGATGGTGTTGGATCTGAGACACTGAAAAATTGTTCAGCTTGTGTGACTTTCACAACTCGCCGATCAGCTGAGAGGGCTTTCC TAAATGGTAAATGTTGGCAAGGCAAGAATTTGAAGTTTGCGTGGCTGACATCTAGCACTTCTAGCAATGAGCCGGGAAGTGGACAAAATTCATTTGCTCC CAATTGTCTTGTAGATACTGATCAGTCTGTTGAAAAACTAGCTTGTTTGGATTCCCAGGAAGCTTCTGCATCAGGAAATGGAGGACCAGAAAATTCAGAG ATAAATAATGGTACTGGCCCCATAGAGTTGCATGAAGCTCTCCAGTGCCATTCAGCCTCAATATTAGGTGAGGCAGAGTCACCGAAATGTGAGCCTAGTC CAACATCAATATCTCATGAGAAAGAGTCAACAAAAAAGGACCCTAGTCAAACTGCAATGTCAGAGAAAGAGACCCCCGAAGGCATTGTCTGGTGA
AA sequence Show only first row Show all	>Potri.017G072100.5 pacid=42813250 polypeptide=Potri.017G072100.5.p locus=Potri.017G072100 ID=Potri.017G072100.5.v4.1 annot-version=v4.1 MELKVSTLKTGGLSPADCISDPEEKEVSDEDDDDRNHKHRRREIRSQSLERDSLEPVFTRPYRKRNKPFENGQFYQENDYNSVPLEKGFATKFERIRPGL VSLPRMPVDWNQRIRSNQTFYGDPGLGRGRGREPVSWSQHDSRFSPVDIASQMVHQGQSLFTGRGLANVSNAQSASWNAYGLFPGIPNGGLDKLRPIGLQ ATLRPAVTSSLNMGIPQQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPRAQLVGTTARPGALPTVGAPSATLINSKGMHSKCNKPG IVNAGLGFNGAHTGSASVSGGDLYDPDQPLWNDSVPETSSALIAPHSPKIDEIESMISIDSFDHNHVSLRGGADNECPIRSTGIAVHSESLNSSVWGKVR ASNNRLHVKEKTDLTVSMLNNMESESKENQGALANVRGTSRQGKQINFEDSSAKTIDSPAKTQSNTMRHTPKPSQKALRTLFVNGIPQKSNKREALLSHF QKFGEVIDIYIPLNTERAFVQFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNLQLSVSKATA VPPSVAPVPAIDHSKVITTNVPKVPPPMQKLESLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQATGVKGEVTAEPASKRHKTGIPASDIVKAATPRSA DPGSASPHAEMVDKNKTVENVVSSSSKTCVMMALQDSAGSKPSIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLANVATLKEYFSSYGDLSAVELE DEPSDYDGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQGKNLKFAWLTSSTSSNEPGSGQNSFAPNCLVDTDQSVEKLACLDSQEASASGNGGPENSE INNGTGPIELHEALQCHSASILGEAESPKCEPSPTSISHEKESTKKDPSQTAMSEKETPEGIVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	0	1
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	2.00	0.8503
AT3G59670			unknown protein		Potri.007G051100 [exp]	2.23	0.8402
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	2.64	0.8642
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	3.16	0.8311
AT2G06040			unknown protein		Potri.006G220600 [exp]	5.65	0.8362
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	5.83	0.8166
AT3G60850			unknown protein		Potri.014G070200 [exp]	7.14	0.8486
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	8.06	0.8227
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	8.48	0.8000
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	8.94	0.8458

Compare expression of checked genes

Potri.017G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.