Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01460 935 / 0 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 69 / 2e-11 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G24330 64 / 2e-10 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G44800 62 / 4e-09 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G05670 60 / 1e-08 RING/U-box protein (.1) AT5G09790 55 / 2e-07 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G35210 55 / 5e-07 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT4G12620 54 / 5e-07 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT4G14700 54 / 9e-07 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT5G22760 53 / 1e-06 PHD finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076900 [exp] 67 / 5e-11 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.012G018300 [exp] 64 / 2e-10 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G183700 [exp] 63 / 8e-10 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.015G009632 [exp] 62 / 8e-10 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G021000 [exp] 62 / 3e-09 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 61 / 6e-09 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.003G126600 [exp] 59 / 3e-08 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G189600 [exp] 58 / 5e-08 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.003G110100 [exp] 55 / 4e-07 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008796 [exp] 1092 / 0 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10022224 [exp] 617 / 0 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 480 / 3e-146 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 376 / 9e-110 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030865 [exp] 90 / 2e-19 AT3G01460 75 / 6e-15 methyl-CPG-binding domain 9 (.1) Lus10042764 [exp] 71 / 4e-12 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 69 / 2e-11 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 66 / 2e-10 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 65 / 4e-10 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008495 [exp] 61 / 6e-09 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF15612 [poplar] [flax] WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1
Representative CDS sequence Show only first row Show all	>Potri.017G072460.1 pacid=42814551 polypeptide=Potri.017G072460.1.p locus=Potri.017G072460 ID=Potri.017G072460.1.v4.1 annot-version=v4.1 ATGAAAGATGGTAACATCCCAGAGTGGGCACAGGTGCTGGAACCTGTTAGAAAGCTACCCACTAATGTAGGAGCTAGAATCAGAAAGTGTGTTTACGATG CTCTGGAGAAATGTCCACCAGAATGGGCAAAAACAAGATTGGAACATTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCAGGACCTACAAAGAAAGC TGTGCTTTCAGTGCTAGCAGATGTATTAACTGGAGTCCAGCAAAAAGCGGTCAAGACAAATAAAAAGAAAATATCTATACCTATTTCTGACATTATAATG AAACAATGTCGTATTGTATTGCGGGAAGCTGCTGCCGCGGATGATGCAAAGGTTTTTTGCACCTTGCTGGGAAGAAATCTCAGAAATTCTTGCGACACTG ATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTTTCTCGTCCTCTGGATTTTAGGACTATTGATTTGAGATTAGCAGCTGGAGCCTATGGTGGTTCACA TGAATCTTTTCTTGAAGATGTTCGAGAGTTATGGAGCCATGTACGCATGGCATTCAGGGAACAGGGTGATTTGGTTGAATTAGCCGAGACACTTTCCCAA AACTTTGAATCATTGTTTGAAAAGGAGGTGGTCACCCTTGTTAAGAAATTTGAGGGTTATGCTAAATTGGATCACATAAGTGCAGAAATAAAGAAAGAAT TAGATGATTTTCTTGCTTCAATACACGAGGTTCCAAAAGCTCCTTGGGATGAAGGGGTCTGCAAAGTATGTGGTGTTGATAAAGATGATAACAGTGTGCT GTTATGTGATACTTGTGATGCCGAGTATCATACTTATTGCTTGAATCCTCCACTTGCAAGGATTCCTGAAGGGAACTGGTATTGTCCATCTTGTGTTGTC AGCAAACATGTGGTTCAGGAGGCATCAGGAATTTCACAGGTTATTGGGATAGTCCACTGTAAAAAGTATCAGGGAGAAATTACCCATGTTTACTTGGAGA AACTCTCACATTTATCCGTTACAATGAAAGAAAAAGAGTATTGGGAGTTTAGTGTTGATGAGAGAATCTACTTGCTAAAGTTTCTATGTGATGAGCTGCT AAACTCAGGTCTTATTCGTCAAAACCTTGAACAGTGCGCAGAAACAACAAATGAGTTGCAGCAGAAATTGCGTGCATTCTCTATGGAATGGAAAACCATG AAATCAAAAGAAGAATTTTTGGCTTCCAGAGCTGCAGATATGGATGGTAGTGCAGTTGGTGAAGTTGGTTTAAAGGAAGCCCTTGCTTCTGCAATTCCAA ACCAGCCCAAGCAGGCGGGACAACAACCTGATGTGAGTGATGGACCTAGCCACTGTAGCTCCTTTGGTCATGATGTGCCAGCACTAAATGGTGGCCAAGA TGGGACTAGGATTAATGGATTCGATAAATACCCTTCTGTATCAAGTTCTGGGAAAAACCATAGTTGTAACAGCCAAACTGTGAATCATACAGATACTAAA GAGCAAGTAAATGATCCCCTTGCTGTTGTGGATGGCAGTAAATTACCTTCTCGAGAAAATGAAAAATCATCCGGACCAAATAATTTGTCTCAAATAATTG GTGACATGGATGAAATTCAATTCCAGGGTAACCTGCAAGGATATGCTGGAAGAGGCACTTCTCTTCTGCCACCACCAGATGTAGGATTCGGCACCGCATT AGAAGAGAACAGTCGCGTGAGTCAGCATGTGCCTCCTGTTGCTATCAATGAATCAGAAGGCTTCAATCTTGAGTTGAGTGCCGTTAAGAATGATCTTCTT CATCTGCAGAACTCAATTAGCAGGATACAATCACAACTTTTGAAACTATCTGTGCGGAGGGAGTTCTTGGGTTCCGATTCCAGAGGTCGCTTGTACTGGG CTTCAACTGGACGAGGTAGTGATCAACGAGTTATTGTTGATGGAAGTTTGACATTGCAGCAAAGGAATTCAGATCAGTTTGGCACTCGTTTAAATCTGGA AGAGCAAAAAACTTTCTTTCCATTCCAATGTACTTCAAATAATGTTCTGGCTATGTGCTCGCCATGTGTTTCTTATGAAACTGAGGAGGAAATTGAACAA CTCATTAGTTGGTTGAAGGATGATGTACAAAAGGAACGAGAGCTGAAAGAGTCCATTTCACAGTGTCTGAAGCAAAGATTTCAAGAGACTCGACAAGCTA GAGACTTGGTTCAAGAAGAGCATCAAGCTTTGTCAGTGATCACAAACAACAACAACACTGCATTTGCTAATTATCTTGTTACCAAGGCTGCGATGTTTCT GGAGAAGAAGTATGGTCCCTTGGTGGAGTTACACACCAGTGACAAGCTGGTCAAAAGGGCAAGAGTGACTGGCGAGGGGAAAATGTACCGTTGTGATTGC TTAGAGCCCATTTTACCTTCCAGACACCACTGCCTCTCTTGCCACCGAACTTTCTCTGATGATATTGAATTCAATGAGCATAATGGCGGTAGGTGCAATT TAATTACACCAGCCAATGCAAAGAGTGAATATATCAGTGGTTTTGTAAAAGTAAAGGGGAATATGAAATCCCAGACCACCCAAAAGGTACCTATCAGTGA AATGGACGTGGTTGAAACTTCTAGAAGTGGTTCCTCTGGGCTTGGGTCGAGGTTAATTAAATCTCAAAATGAAGGGATATGCCCCTATGACTTCAGTGAA ATCAGTTCCAAGTTTGTGACAGAAGATTCCAACAAGGAATTGGTACATAAAATAGGTCTTATTGGTTCAAATGGGGTTCCTTCATTTATCACATCTCTTT CATCTGATCTCAATCATTCCATGTCAATGCTGATTTGTCATGGAGAAAATAATGGTGTTGTTGGTGATGAGTTGAGTATTGATGGAAGGATGGTTGTTTC AAAAGGAAAAAAGAGCGAAAGCAGTGCAGCCCTTGATAATATTTATGATAATTCTTCATGGAAATCTGTTGCAAATGAAATTAGCAAAGTATCAAAAACC GAGAAGCCGCCTCCAGGACATGTGGAACATAGAAAAAAGAAATCTTCTTCAAATAAACATTTTCCTGAAATAGGGGCTGGTTTCTGCTGTGTAGTTCCTC GGTCATCCTTGAGGCCCTTAGCTGGAAACGTTTTGCATATTTTAAGGCGACTAAAGATCAATTTGCTTGATATGGAAGCGGCCCTTCCTGAAGAAGCACT TAAACCCTCAAAAGTGCATTTGGATAGAAGATTGGCTTGGCGTGTGTATGTTAAATCTGCAGGATCAATCTATGAGATGATCCAAGCAACAATTATATTG GAGGAGATGATTAAGACAGATTATTTGCGGAATGAGTGGTGGTACTGGTCATCGTTTTCTGCTGCTGCCAAGACTTCGACAATTGCTTCCCTAGCTCTAC GAATATATTCCCTTGATGCTGTGATTGTGTACGAGAAGGCCACGCCGAACTTAGATTCAACCAACAGTTTGAAGCCTGTGGGTATGCTGGATAAGAAGCC ATTGCCTGGTTTGGATCTAACAGACAAAAGCAAAGTAAGCAGGAAGTCTAACAAGAAAAGGAAGGAACCAGAATGA
AA sequence Show only first row Show all	>Potri.017G072460.1 pacid=42814551 polypeptide=Potri.017G072460.1.p locus=Potri.017G072460 ID=Potri.017G072460.1.v4.1 annot-version=v4.1 MKDGNIPEWAQVLEPVRKLPTNVGARIRKCVYDALEKCPPEWAKTRLEHSISKEVYKGNASGPTKKAVLSVLADVLTGVQQKAVKTNKKKISIPISDIIM KQCRIVLREAAAADDAKVFCTLLGRNLRNSCDTDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHESFLEDVRELWSHVRMAFREQGDLVELAETLSQ NFESLFEKEVVTLVKKFEGYAKLDHISAEIKKELDDFLASIHEVPKAPWDEGVCKVCGVDKDDNSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVV SKHVVQEASGISQVIGIVHCKKYQGEITHVYLEKLSHLSVTMKEKEYWEFSVDERIYLLKFLCDELLNSGLIRQNLEQCAETTNELQQKLRAFSMEWKTM KSKEEFLASRAADMDGSAVGEVGLKEALASAIPNQPKQAGQQPDVSDGPSHCSSFGHDVPALNGGQDGTRINGFDKYPSVSSSGKNHSCNSQTVNHTDTK EQVNDPLAVVDGSKLPSRENEKSSGPNNLSQIIGDMDEIQFQGNLQGYAGRGTSLLPPPDVGFGTALEENSRVSQHVPPVAINESEGFNLELSAVKNDLL HLQNSISRIQSQLLKLSVRREFLGSDSRGRLYWASTGRGSDQRVIVDGSLTLQQRNSDQFGTRLNLEEQKTFFPFQCTSNNVLAMCSPCVSYETEEEIEQ LISWLKDDVQKERELKESISQCLKQRFQETRQARDLVQEEHQALSVITNNNNTAFANYLVTKAAMFLEKKYGPLVELHTSDKLVKRARVTGEGKMYRCDC LEPILPSRHHCLSCHRTFSDDIEFNEHNGGRCNLITPANAKSEYISGFVKVKGNMKSQTTQKVPISEMDVVETSRSGSSGLGSRLIKSQNEGICPYDFSE ISSKFVTEDSNKELVHKIGLIGSNGVPSFITSLSSDLNHSMSMLICHGENNGVVGDELSIDGRMVVSKGKKSESSAALDNIYDNSSWKSVANEISKVSKT EKPPPGHVEHRKKKSSSNKHFPEIGAGFCCVVPRSSLRPLAGNVLHILRRLKINLLDMEAALPEEALKPSKVHLDRRLAWRVYVKSAGSIYEMIQATIIL EEMIKTDYLRNEWWYWSSFSAAAKTSTIASLALRIYSLDAVIVYEKATPNLDSTNSLKPVGMLDKKPLPGLDLTDKSKVSRKSNKKRKEPE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	2.82	0.8697
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056400 [exp]	5.29	0.8635
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	7.74	0.8647
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	8.94	0.8544
AT4G39420			unknown protein		Potri.005G086100 [exp]	11.22	0.8508
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	13.67	0.8384	BRD911
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	14.07	0.8414
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	17.32	0.8519	Pt-CRP.3
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	17.54	0.8027
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	19.62	0.7972

Compare expression of checked genes

Potri.017G072460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.