Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01460 704 / 0 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT4G14920 44 / 0.0007 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT2G19260 44 / 0.0008 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009632 [exp] 46 / 0.0001 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 45 / 0.0003 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.016G097300 [exp] 43 / 0.001 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008796 [exp] 875 / 0 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10022224 [exp] 874 / 0 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 126 / 4e-29 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 125 / 7e-29 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10020162 [exp] 52 / 3e-06 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015537 [exp] 50 / 6e-06 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020012 [exp] 49 / 3e-05 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain CL0081 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Potri.017G072580.1 pacid=42813962 polypeptide=Potri.017G072580.1.p locus=Potri.017G072580 ID=Potri.017G072580.1.v4.1 annot-version=v4.1 ATGAAACTCACAACCGATTCAAGCGATATAACGAGTCGCTCCCCTCTAGGCATCGATCTCAATGAGATCCCCTCCACTTCGACCTCTTCTCCTCCAGAAA ATTCATTGGATGTGGTGCTGTCCTTTCACGAGAACCCAGACCCGGCGCCGGGAATGGCTGCTGGGTTGCGGGCCGAGGGATCGATGTGCGGGGCATGCGG AAAGCCGGAGGTGCGGGGTCAAGTGGTTGTTTGTGACGGTTGCGAGCGTGGTTTCCACCTAGGTTGCGCTGGAAGGCAAGCTATTAATTCGGCGGAATGG CTATGTGGAGAGTGCCTTAGTGGCGGCGTTAAGAGCAAACGTTGGCCATTAGGTGTTAAACGGATTTTGGACATCAACGCTTCGCCACCAAGCGATGCCG AGGATGAATTGCTTTCAAATTTGAGGAAGCACACTCAGAGTCAGGGTGATAATTCTTTTGGTGCCCCCCCTCTCACATATTCAAATCTTTTCTACACCGG GTATGGATTATTGTCAGACGTAATGCGTCCTATGCAAACTGCAGATACAAGTGCTGAGGGTGCAGGGATGAGTTTCCCTCAAGGAAGCCTTAGAAGCAGG AATAATACAACCATTAGATTATTGTCTCGCAATCCTAGTGAGATTTTCTTGCAGGGTCTCAGAGAATTCATTTCTGAAAGGCATGGTGTTCTGGAAGAAG GTTGGAGTGTCGAATTTAAACATTCTATCAGTAATTATGACCTCTATGCAGTTTATTGCTCTCCAGATGGAAAGACTTTTCACTCGATGTCTGAGGTTGC TTGCCATCTTGGCCTGATGCCTAATCGTAATTCAATCGACACGGACTCAACAAGTTACGTGTCTCCCTCTCCGCAGGAAACTTTGCATCTACCCAGAAAG AGCAAGTCCAAAAGATGTTCACTTACCAATGTTTTTTCTGAACATAAAACAACTTTGGTGAGCGGCTACTGCAAGGAGCTTTTTTCCAATGGTCAAAGTA TTGAAATTAACAACGCTAACCTTGGTGAAGTTAGAGAATCTGAGATGCAAGGAGATGGCATATCTGATTTCCAGCCATCTAATGAAGGACTTCCTGTCCA GTTTGAAGACTTCTTTGTTCTTTCTTTGGGAAAAATCGATGTGAGACCTACATATCATAATGCTAGCCTGATTTGGCCTGTAGGTTATAGATCCTGTTGG CATGATAAGATTACTGGATCCATTTTTTTGTGTGAAGTGTCAGATGGCGGTGATTCTGGACCTGTTTTCAAGGTTAGGAGGGTCTCATGCTCATTGTTGC CTGTTCCTCAGGGGCTAACTGTTCTATGTAGGACAAACTTTGGCCAGTATAGTAGTCACAATAACCAAGATTGTCATCATATGATTTTCCACAATATCGA TTGCGAAAGTGATGACAATATTGAGTTGATTCTTGCAGACCCTGCCCCGCCATCATATGATGATGTTCTAACCTGTCTTCAGGGCAGTTCAAATAGAACA TCGGAGATTATGCAAACTAGCTCCTTTGATAGCAGGTCTGAAAACTTTTTGTTCAGTGATAAAGTATTAGGAGAGGAGATTGGTGAGATTTCAGTGGAAG AGCGTTCCTCAACTTCAGCATGGACAGTGATATCTCAGAAATTAGTGGATGCTTACTCTGAAATACATAGACAGCGAGGTACTCTTAAGGTCTCCTGCAA CCATGCAGATAATGAAATGGGTTCACCAGGCTTGTATACCAAGAATGAAAATAGCAATGCAAGTTCTGCCTCATTAGCCAAATTTTGCAGCTGTCCCAAC TTTGTTGGAATCCCATTGGAATGCCAGGGTGAACTTGAGGCTTTCTCTTCTACATTATCAGAATGGCTGGATCAGGATAGATTTGGGTTGGACACAGAAT TTGTTCAAGAAATGATAGAACAGCTCCCTGGTGCAAAAGCCTGTTTGAAGTATGAATTTCTGATTAATAGGGGTCATTATTCTGTGTCTCCAACTGTTGG AAATGGATTCTTAATGGCTAAAAGAAAAAGTAGATCAGAATCAGATGCTTTATTTCAAAGATCCAAAAAAGCCAGGTTGGCTAAAGAGATTTTGGGGGAT TATCAATATCCTGCTGGGAGGCCTTTGTGTTCCAGGCTCCCTCCTGTACTTGTTGGTGACTTTTATCAGGTATTGGAGTTATTGTGGCGCTTCCATGAAA TATTGGGTTTGAAAGAGCCTCTTTCCTTAGAGGAACTTGAAGAAGAACTTATCAATCCATGGTCTAATCTTTCTCATCTTCTAAAGAATCTTGAGAACAA GGTCCATGGTAGTGAAGCCATAGATTTTTATGAAGCAGATAGTATGAGTGGACTAAACTCATTTTTACCTGATAAATCTGGCATGACAGTTTGTGAGGGT AATTCACATGCATGTGTTAATGATGAAGGATGTAGGATGGGAGTGAAGGATGGAGGCCAAGCTACAGTTGCATCTGTTACCCACATCAGTCGCAGTGGTG TAGCTTCGACTAATGCACATTGCTCGTTGTTAGGTATGCTAATAAGTGAGCTACAATGCAAGATTGCTCCACTAGTAGATCCAAATTTTGATTCTGGGGA GACAAAATCAAAACGGGGAAGGAGGAAAGACGCAGATAGCTCAGCTCCAACAAGAAGAAATAACCTCAATATGCTCCCTATTAATGAATTGACTTGGCCA GAATTAGCCAGGAGATACATCTTAGCAGTCTTAACTATGGATGGTAATCTTGAATCTGCTGAGATTACTGGTCGTGAAATGGGCAGAGTGTTTCGCTGCA TACAAGGTGATGGTGGGGTGCTTTGTGGCGCTCTTACTGGAGTTGCAGGCATGGAAGCAGATGCACTTTTTCTTGCAGAGGCTACAAAAAAGTTTTTGGT TCTTTGA
AA sequence Show only first row Show all	>Potri.017G072580.1 pacid=42813962 polypeptide=Potri.017G072580.1.p locus=Potri.017G072580 ID=Potri.017G072580.1.v4.1 annot-version=v4.1 MKLTTDSSDITSRSPLGIDLNEIPSTSTSSPPENSLDVVLSFHENPDPAPGMAAGLRAEGSMCGACGKPEVRGQVVVCDGCERGFHLGCAGRQAINSAEW LCGECLSGGVKSKRWPLGVKRILDINASPPSDAEDELLSNLRKHTQSQGDNSFGAPPLTYSNLFYTGYGLLSDVMRPMQTADTSAEGAGMSFPQGSLRSR NNTTIRLLSRNPSEIFLQGLREFISERHGVLEEGWSVEFKHSISNYDLYAVYCSPDGKTFHSMSEVACHLGLMPNRNSIDTDSTSYVSPSPQETLHLPRK SKSKRCSLTNVFSEHKTTLVSGYCKELFSNGQSIEINNANLGEVRESEMQGDGISDFQPSNEGLPVQFEDFFVLSLGKIDVRPTYHNASLIWPVGYRSCW HDKITGSIFLCEVSDGGDSGPVFKVRRVSCSLLPVPQGLTVLCRTNFGQYSSHNNQDCHHMIFHNIDCESDDNIELILADPAPPSYDDVLTCLQGSSNRT SEIMQTSSFDSRSENFLFSDKVLGEEIGEISVEERSSTSAWTVISQKLVDAYSEIHRQRGTLKVSCNHADNEMGSPGLYTKNENSNASSASLAKFCSCPN FVGIPLECQGELEAFSSTLSEWLDQDRFGLDTEFVQEMIEQLPGAKACLKYEFLINRGHYSVSPTVGNGFLMAKRKSRSESDALFQRSKKARLAKEILGD YQYPAGRPLCSRLPPVLVGDFYQVLELLWRFHEILGLKEPLSLEELEEELINPWSNLSHLLKNLENKVHGSEAIDFYEADSMSGLNSFLPDKSGMTVCEG NSHACVNDEGCRMGVKDGGQATVASVTHISRSGVASTNAHCSLLGMLISELQCKIAPLVDPNFDSGETKSKRGRRKDADSSAPTRRNNLNMLPINELTWP ELARRYILAVLTMDGNLESAEITGREMGRVFRCIQGDGGVLCGALTGVAGMEADALFLAEATKKFLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072580 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029800 [exp]	59.14	0.6239
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.014G052600 [exp]	67.11	0.6336
AT4G33640			unknown protein		Potri.017G042432 [exp]	109.54	0.6289
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	153.05	0.6083
AT1G04610		YUC3	YUCCA 3 (.1)		Potri.010G062400 [exp]	181.00	0.5879
AT3G19870			unknown protein		Potri.008G085300 [exp]	186.48	0.5919
AT5G62620			Galactosyltransferase family p...		Potri.015G067600 [exp]	201.99	0.5988
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	264.99	0.5720

Compare expression of checked genes

Potri.017G072580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.