Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01480 665 / 0 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) AT3G15520 136 / 3e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G53720 53 / 3e-07 ATCYP59, CYP59 cyclophilin 59 (.1) AT2G36130 44 / 6e-05 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G33060 44 / 0.0001 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351400 [exp] 844 / 0 AT3G01480 666 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.001G404700 [exp] 135 / 8e-35 AT3G15520 612 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G097500 [exp] 52 / 5e-07 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.016G075600 [exp] 45 / 1e-05 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014534 [exp] 661 / 0 AT3G01480 639 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10032151 [exp] 532 / 0 AT3G01480 512 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10038601 [exp] 139 / 4e-36 AT3G15520 597 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10037891 [exp] 127 / 1e-32 AT3G15520 508 / 5e-180 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031194 [exp] 49 / 8e-06 AT1G53720 640 / 0.0 cyclophilin 59 (.1) Lus10031772 [exp] 46 / 5e-05 AT1G53720 639 / 0.0 cyclophilin 59 (.1) Lus10021335 [exp] 44 / 5e-05 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 42 / 0.0004 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.017G072800.6 pacid=42813936 polypeptide=Potri.017G072800.6.p locus=Potri.017G072800 ID=Potri.017G072800.6.v4.1 annot-version=v4.1 ATGGCAGCCATAATCCCATGCCACTATTGTTCTTCCCTGTCTATATCCAAACTACCCAGAAGCCATATTCCTTGGGGAAACATTAGCCATGTCAATGCTG CTCGGTGGGGTAGGCAGCTCTCTCTCAGATGTTCTCTCAAAAGCTCCCAGAAGGCTCAGCTTCATAATAAACTGAATGAAAAGTTATTTCCCTTTAAGGA ATATGCAATCTCTATTGCTTTGGCGGTTGGATTGGTAACAGGAATGCCTTTTGTAGATTGGTCTCCAAACGCTTATGCAGCTAATCCAGCAATGCCTGAT CTCTCAGTGTTAATATCTGGACCACCAATCAAGGACCCGGGTGCATTATTAAGATATGCTCTTCCAATTGACAATAAAGCTATAAGGGAAGTACAGAAGC CACTTGAAGATATCACAGATAGTCTCAAGGTTGCTGGAGTCAAGGCACTTGATTCTGTGGAGAGAAATGTCAGGCAAGCATCTCGATCCCTTGAGCAGGG AAAGAGTGTGATTATCTCAGGCTTAGCTGAATCAAAGAAGGACCATGGAGTGGAGTTGCTTGATAAACTTGAAACTGGAATGGATGAACTTCAACAGATT GTGGAGGGTCGGAACAGAGATGCAGTTGCAACTAAGCAGAAAGAGCTGCTTAATTATGTTGGCAGTGTTGAAGAGGATATGGTGGAGGGCTTCCCATACG AAGTGCCTGAGGAATATCAGAGCATGCCTGTCTTGAAGGGAAGAGCAACTGTGGATATGAAGGTCAAGGTTAAAGACAACCCCAATATAGACGAGTGTGT TTTCAGGATTATTCTAGATGGTTACAATGCTCCGGTAACAGCTGGGAACTTTTTAGACTTGGTGGAACGGCACTTCTACGATGGAATGGAAATTCAAAGA GCGGATGGCTTTGTTGTTCAAACCGGAGATCCTGAAGGTCCTGCAGAGGGGTTTATTGATCCTAGTACAGAGAAAACTCGGACAATACCATTGGAAATCA TGGTGAATGGAGAGAAATCTCCTTTCTATGGGACAACTTTGGAGGAGCTTGGTTTATACAAGGCTCAAACAAGGCTTCCATTCAATGCTTTTGGAACAAT GGCCATGGCCAGAGAAGAGTTTGAGAGCAACTCGGCTTCGAGCCAAGTATTTTGGCTACTAAAAGAAAGTGAGCTAACGCCCAGCAATGCAAATATATTG GATGGTCGATATACTGTCTTTGGTTATATTACAGAAAATGAGGATTCTTTAGCAGATCTCAAGGTTGGTGATGTCATAGAGTCTATTCAAGTGGTTTCTG GCCTAAATAATTTGGTTAATCCAAGCTATAAGATTGCCGGTTAG
AA sequence Show only first row Show all	>Potri.017G072800.6 pacid=42813936 polypeptide=Potri.017G072800.6.p locus=Potri.017G072800 ID=Potri.017G072800.6.v4.1 annot-version=v4.1 MAAIIPCHYCSSLSISKLPRSHIPWGNISHVNAARWGRQLSLRCSLKSSQKAQLHNKLNEKLFPFKEYAISIALAVGLVTGMPFVDWSPNAYAANPAMPD LSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKVAGVKALDSVERNVRQASRSLEQGKSVIISGLAESKKDHGVELLDKLETGMDELQQI VEGRNRDAVATKQKELLNYVGSVEEDMVEGFPYEVPEEYQSMPVLKGRATVDMKVKVKDNPNIDECVFRIILDGYNAPVTAGNFLDLVERHFYDGMEIQR ADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVNGEKSPFYGTTLEELGLYKAQTRLPFNAFGTMAMAREEFESNSASSQVFWLLKESELTPSNANIL DGRYTVFGYITENEDSLADLKVGDVIESIQVVSGLNNLVNPSYKIAG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	0	1
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	1.00	0.9682
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	2.82	0.9610	Pt-AFO.1
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	3.46	0.9439
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	3.74	0.9433
AT5G04440			Protein of unknown function (D...		Potri.010G230900 [exp]	4.58	0.9590
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	5.65	0.9381
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258550 [exp]	6.48	0.9321
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	6.63	0.9498
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	7.28	0.9020
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	7.74	0.9459

Compare expression of checked genes

Potri.017G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.