Plant FIBer expression Database

Potri.017G073000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55250 311 / 8e-107 PDE329 PIGMENT DEFECTIVE 329, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022229
[exp]
353 / 3e-123 AT3G55250 331 / 8e-115 PIGMENT DEFECTIVE 329, unknown protein
Lus10008788
[exp]
350 / 6e-122 AT3G55250 334 / 6e-116 PIGMENT DEFECTIVE 329, unknown protein
PFAM info
Representative CDS sequence
>Potri.017G073000.1 pacid=42813656 polypeptide=Potri.017G073000.1.p locus=Potri.017G073000 ID=Potri.017G073000.1.v4.1 annot-version=v4.1
ATGGTGATTGTAACAACATCTGGTTCATCATCATCATCATCATGTCTACACGTTCAAATCCTTCCTTGGGGCAAGCCCATTCCACAATTCCTGCAACATT
TCAACCAAATCTACCCCAATTGTAAAAGACCCAGCAGACAAAAAGTGCAGAACTCGAATGGGGTCTTATCAGTCACAGCGTACATGGAGAATCCAAATTC
TATCTCTAGTTTTGCCAACAAAGTGCTTGGCTCTCTCCCTGTTGTCGGCCTTGTAGCTAGGATTCTTAGTGATGAAGGTGGAGTTGGAGGTGATATTATA
GATTTTGCAGAGTTTAGAAGGAGAGTGGGCAAAAAGTGCACTATTACTGATTCTAGAGCTTTCTATGAATTCCAGGACAGACGTGGCCGGGCAGGGGATC
CTTTGTATGTTCTACTTTGCTGTTGGCTAGCTGCTGTTGGTGCCGGTTTTCTCAAATCCGAAGAGATTTTGGAGGGAGTAGCGAGGCTTCGGCTATCAAA
TGATATTGAGTTCGAAGAGGAGACTTTCATGGCTTTAATAAACGACACAAAAGAGAAACGAGCAAAAACAAAGACTGCAGCCACTGCTATCCCCATGGAG
GTACGGGTTGAGAAGGCACTTGAGGCAATTTACATCTGCTGTTATGGGAAGGATATTATTGAAGAAGAAGACAAGAGACTGCTGAATGTCATGCTGAGTT
CAGTTTTTCAATCAGTCGAGCAGCGTGAAATACAAAGAATTGTTGCAGAGAAGGCAAGAAAAGTGGCTGATGGCAGTGACGAGGTCAATATTCAAGAGCC
AAAGCCCTTGCCAAAAGAAGCTGTTAAGTTGCAAATGAAAGACCTTCAATTCCTTAAACAAAACTCAGAAATTTGA
AA sequence
>Potri.017G073000.1 pacid=42813656 polypeptide=Potri.017G073000.1.p locus=Potri.017G073000 ID=Potri.017G073000.1.v4.1 annot-version=v4.1
MVIVTTSGSSSSSSCLHVQILPWGKPIPQFLQHFNQIYPNCKRPSRQKVQNSNGVLSVTAYMENPNSISSFANKVLGSLPVVGLVARILSDEGGVGGDII
DFAEFRRRVGKKCTITDSRAFYEFQDRRGRAGDPLYVLLCCWLAAVGAGFLKSEEILEGVARLRLSNDIEFEEETFMALINDTKEKRAKTKTAATAIPME
VRVEKALEAIYICCYGKDIIEEEDKRLLNVMLSSVFQSVEQREIQRIVAEKARKVADGSDEVNIQEPKPLPKEAVKLQMKDLQFLKQNSEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55250 PDE329 PIGMENT DEFECTIVE 329, unknown... Potri.017G073000
[exp]
0 1
AT1G55140 Ribonuclease III family protei... Potri.001G200300
[exp]
2.00 0.9625
AT3G15580 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ub... Potri.002G189450
[exp]
4.58 0.9497
AT4G25370 Double Clp-N motif protein (.1... Potri.015G131700
[exp]
5.47 0.9465
AT3G46630 Protein of unknown function (D... Potri.014G023400
[exp]
9.69 0.9500
AT4G01940 ATCNFU1, NFU1 NFU domain protein 1 (.1) Potri.002G192200
[exp]
10.95 0.9319 Pt-NFU1.2
AT2G39000 Acyl-CoA N-acyltransferases (N... Potri.008G039300
[exp]
16.91 0.9426
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Potri.007G043600
[exp]
17.32 0.9434
AT1G68660 Ribosomal protein L12/ ATP-dep... Potri.008G117800
[exp]
17.88 0.9240
AT2G34460 NAD(P)-binding Rossmann-fold s... Potri.011G079600
[exp]
19.59 0.9425
AT3G25480 Rhodanese/Cell cycle control p... Potri.002G239800
[exp]
21.35 0.9438

Potri.017G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.