Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40280 511 / 8e-180 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) AT2G39550 112 / 2e-27 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT3G12070 108 / 4e-26 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT5G12210 107 / 8e-26 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012500 [exp] 124 / 6e-32 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.008G054500 [exp] 110 / 9e-27 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032149 [exp] 543 / 0 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 499 / 4e-175 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10039714 [exp] 119 / 7e-30 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10018502 [exp] 116 / 3e-29 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10040303 [exp] 71 / 3e-13 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 53 / 2e-07 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.017G073200.2 pacid=42812909 polypeptide=Potri.017G073200.2.p locus=Potri.017G073200 ID=Potri.017G073200.2.v4.1 annot-version=v4.1 ATGGAAAGTGGTGGAGAGACGGTGACTCAAGTGGAGCAGTGGTCTGTTGAGGATCGGGTGTTCCGGATATACAATCTGTTCGCTAATATTCCTCCTGTAG CCCAAACCACCATGTTGGAGCTTCAACGTGACGAGCACATTATATACCTTAATGAAGGTCTCAAGCAACTCGGTCCCTCCTTTGTAGCTCTGGATTCCAG TCGACCTTGGCTTTGCTACTGGATCATACATTCCATGGCTTTGCTGGGGGAGTCTCTTGATTACCAACTCGAAAATAATGCCATTGACTTTCTTAACCGT TGCCAGGACCCAAATGGTGGATTTGGTGGCGGACCTGGACAGATGCCACATCTCGCAACAACATATGCTGCAGTGAATTCAATTGTTACTTTAGGAGGAC AGAAAGCCCTGTCTTCAATTAATAGAGACAAATTATACAACTTTTTATTGCGAATGAAAGATCCAAGCGGGGCCTTCAGGATGCATGATGCTGGTGAAAT TGATGTACGAGCATGCTATACCGCCATTTCAGTTGCTAGTATTCTCAACATTCTGGATGATGAGCTCGTTAGGGGTGTTGGTAATTTCATCTTAAGCTGT CAGACATATGAAGGTGGTATTGCAGGAGAACCTGGTTCTGAAGCTCATGGTGGGTATACTTTTTGTGGATTGGCTACCATGATTTTGATCAATGAGGTTA ACCATTTGGACTTGGCTGGTTTAATTGATTGGGTCGTCTTTCGACAAGGAGTGGAGTGTGGATTTCAGGGGAGAGCAAACAAATTGGTTGATGGTTGCTA CTCTTTTTGGCAGGGAGGCGTGCTTGCATTATTACAAAGAATAGATTTGGTTACTGGTGATCGTCTATCACTATTTGATTCTGGAGAAGAGGACAGCACT GGAAATAGTACTTCTGAAGGAGAAGATACTGATGGAATTTCATCTGCGGCTGAGGAGACTTGCCATTTTAAGAATGGAGAGCAGCAGGATACTTCTTGTT CAGTGAACGACACCAGTTCCAGTCATACTCGATCTTTGGGAAATGTAGAACTGGAACCTCTTTTTCACAGCTTGGCATTACAGCAGTACATACTTCTATG CTCACAGTTAGAGAATGGTGGATTCAGAGACAAACCAGGGAAGCCCCGAGACTTTTATCACACATGTTATTGTCTAAGTGGCCTCTCTGTATGCCAGCAT AGCTGCTCCAAGGATTACGATTCTCCATCCTTGCCCGGGCAGGTGTTGGGTCCCTATTCAAATCTCTTGGAACCCGTCCATCCACTCTACAACGTCGTCT TGAAACAGTACAGGGAGGTTCGTGAATTCTTTTCTAGGTCTTGA
AA sequence Show only first row Show all	>Potri.017G073200.2 pacid=42812909 polypeptide=Potri.017G073200.2.p locus=Potri.017G073200 ID=Potri.017G073200.2.v4.1 annot-version=v4.1 MESGGETVTQVEQWSVEDRVFRIYNLFANIPPVAQTTMLELQRDEHIIYLNEGLKQLGPSFVALDSSRPWLCYWIIHSMALLGESLDYQLENNAIDFLNR CQDPNGGFGGGPGQMPHLATTYAAVNSIVTLGGQKALSSINRDKLYNFLLRMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELVRGVGNFILSC QTYEGGIAGEPGSEAHGGYTFCGLATMILINEVNHLDLAGLIDWVVFRQGVECGFQGRANKLVDGCYSFWQGGVLALLQRIDLVTGDRLSLFDSGEEDST GNSTSEGEDTDGISSAAEETCHFKNGEQQDTSCSVNDTSSSHTRSLGNVELEPLFHSLALQQYILLCSQLENGGFRDKPGKPRDFYHTCYCLSGLSVCQH SCSKDYDSPSLPGQVLGPYSNLLEPVHPLYNVVLKQYREVREFFSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Potri.017G073200 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118300 [exp]	9.53	0.6651
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.018G068200 [exp]	16.00	0.6300	NFC906,ATMSI4.3
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	78.99	0.6180
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	104.64	0.5944
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	107.00	0.5813
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	108.94	0.6239
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.005G217500 [exp]	109.25	0.5883
AT1G74320			Protein kinase superfamily pro...		Potri.001G032000 [exp]	136.70	0.6168
AT5G57700			BNR/Asp-box repeat family prot...		Potri.018G097100 [exp]	238.62	0.5769

Compare expression of checked genes

Potri.017G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.