Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40140 328 / 8e-108 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G62560 300 / 6e-97 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G65200 296 / 3e-95 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT3G47820 246 / 1e-76 PUB39 PLANT U-BOX 39 (.1) AT2G23140 115 / 2e-27 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 103 / 1e-23 ARM repeat superfamily protein (.1) AT3G46510 96 / 3e-21 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 96 / 3e-21 AtPUB12 PLANT U-BOX 12 (.1) AT3G54790 95 / 7e-21 ARM repeat superfamily protein (.1.2) AT1G23030 94 / 1e-20 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071200 [exp] 327 / 3e-107 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.012G076400 [exp] 282 / 7e-90 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.005G144700 [exp] 116 / 5e-28 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 113 / 6e-27 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G113900 [exp] 108 / 3e-25 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 102 / 4e-23 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G165900 [exp] 100 / 1e-22 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.002G009900 [exp] 99 / 5e-22 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.008G035700 [exp] 98 / 9e-22 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039470 [exp] 316 / 1e-102 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10034119 [exp] 294 / 2e-94 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10043464 [exp] 289 / 3e-92 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10039447 [exp] 279 / 2e-88 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10011514 [exp] 117 / 6e-28 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 115 / 1e-27 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10043471 [exp] 108 / 2e-25 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 108 / 6e-25 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10016016 [exp] 106 / 1e-24 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 105 / 2e-24 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.017G073400.2 pacid=42813957 polypeptide=Potri.017G073400.2.p locus=Potri.017G073400 ID=Potri.017G073400.2.v4.1 annot-version=v4.1 ATGTCCAGTTTCCGGTACTCTCATGAAGGACCCGAAAAGCTTGTCCGCGCAAAAATATTAGAAACCCAACAACAGAAACCGAAACCTCCCAAGAAGAACG AACATCAAGACACTGGTGCTGGGATTGATCACGTAGTTACTGATTTGATCACTCAGACCCCAAGTACTCATGACTCCTGGAGCTCAGACGATTCTCCCCT CCAACTCAAGACTCGATCGAGTTACTACTCTTCTCCTTCTTCCTCCACGGCCGAGATAGAAGCCTTTAACCCTAACCCCAAAGATGAAGAGTTTGTTAGA AAACTCAAAAGCCCGCTAGTGTTTGAGATTGAAGAAGGTCTCATTTCATTAAGAAACACAACGAGAGCTAGAGAAGATGATACCAAACTGCAGCTTTGTA CCTCTCGGCTTCTCTCAGTATTACAGCCTTTGATCATTTCGAGGTACACAAACATTCAAGTCAACTCAGTTGCTTGTTTAGTTAATTTGTCTTTAGAGAA AAATAACAAAATTAAGATAGTACGGTCTGGGATTCTTCCTTTGTTGATTCATGTGTTAAAAGGAGGTTTCCCTGAGGCAAAAGAGCATGCTTGTGGTGCA ATTTTTAGTTTAGCACTTGATGACCGTAACAAGACTGCAATCGGCGTTTTGGGTGCTTTGCCTCCACTTCTACATTTGCTGCGATCCGCTGAGAGTGACC GGACTCGGCATGACTCGAGCTTAGCTTTATATCATCTCTCACTAGTTCAAAGCAACATCACTAAGCTAGTAAAACTTGGGTCAGTGCCAATTCTTTTGGA GATGGTCAAGTCAGGTCGTATGGAGAGTCGGGTTCTATTAATATTGTGTAACTTGGCTTTGAGTCCGGATGGCCGGCATGCGATGTGGGATTCAGGTGGG GTGGAGGTTTTGGTGGGCTTGTTGAGGAGAAGTGAGTTGAAATCTGAGTCAACTCAAGATATTTGTGTGTCTGTTCTGTATGGACTGAGTCATGGGGGTC TGAGGTTTAAAGGGTTGGCAAGGGCAGCAGGTGCGGTGGAGGTGTTGATGCAAGTGGAGAAGACAGGAAACGAGCGGACTAAGGAGAAGGTAAGGAGAAT ATTCAAGATGATGACGGAGATAAGAATGGAGAAAGAGGATGTGAATTGGGAGGAAGTGCTAGAGGACTCGGGATCAACTCGATGTCGATTCGGTGGTGGA AAGGATGGGCTAAGCACAAACGCATGA
AA sequence Show only first row Show all	>Potri.017G073400.2 pacid=42813957 polypeptide=Potri.017G073400.2.p locus=Potri.017G073400 ID=Potri.017G073400.2.v4.1 annot-version=v4.1 MSSFRYSHEGPEKLVRAKILETQQQKPKPPKKNEHQDTGAGIDHVVTDLITQTPSTHDSWSSDDSPLQLKTRSSYYSSPSSSTAEIEAFNPNPKDEEFVR KLKSPLVFEIEEGLISLRNTTRAREDDTKLQLCTSRLLSVLQPLIISRYTNIQVNSVACLVNLSLEKNNKIKIVRSGILPLLIHVLKGGFPEAKEHACGA IFSLALDDRNKTAIGVLGALPPLLHLLRSAESDRTRHDSSLALYHLSLVQSNITKLVKLGSVPILLEMVKSGRMESRVLLILCNLALSPDGRHAMWDSGG VEVLVGLLRRSELKSESTQDICVSVLYGLSHGGLRFKGLARAAGAVEVLMQVEKTGNERTKEKVRRIFKMMTEIRMEKEDVNWEEVLEDSGSTRCRFGGG KDGLSTNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40140			RING/U-box superfamily protein...		Potri.017G073400 [exp]	0	1
					Potri.002G099150 [exp]	5.83	0.9991
					Potri.008G172250 [exp]	14.56	0.9524
					Potri.006G062050 [exp]	15.42	0.9989
AT1G77780			Glycosyl hydrolase superfamily...		Potri.005G172000 [exp]	16.15	0.9653
					Potri.011G044012 [exp]	20.61	0.9673
					Potri.008G079750 [exp]	20.68	0.9505
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.005G254800 [exp]	22.27	0.9840
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Potri.001G220500 [exp]	22.44	0.9791
AT5G05800			unknown protein		Potri.008G217500 [exp]	24.73	0.9989
AT3G10330			Cyclin-like family protein (.1...		Potri.017G093100 [exp]	25.69	0.9261

Compare expression of checked genes

Potri.017G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.