Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28150 456 / 2e-159 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G15900 306 / 1e-100 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 297 / 8e-96 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT4G23790 293 / 1e-95 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 291 / 1e-94 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 291 / 1e-94 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G11090 290 / 3e-94 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 274 / 2e-88 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G51640 245 / 3e-76 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 233 / 6e-71 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144100 [exp] 476 / 7e-168 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105700 [exp] 334 / 3e-111 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.014G095800 [exp] 310 / 9e-102 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105500 [exp] 303 / 1e-99 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 303 / 2e-99 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.002G168400 [exp] 302 / 7e-99 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 296 / 2e-96 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 292 / 9e-95 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.010G095700 [exp] 282 / 2e-91 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039438 [exp] 516 / 0 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10039476 [exp] 514 / 0 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10034087 [exp] 325 / 4e-108 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 324 / 1e-107 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029454 [exp] 302 / 5e-99 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 299 / 1e-98 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10024167 [exp] 300 / 2e-98 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029188 [exp] 279 / 2e-89 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10032367 [exp] 277 / 1e-88 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10010704 [exp] 276 / 1e-88 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.017G073700.1 pacid=42814370 polypeptide=Potri.017G073700.1.p locus=Potri.017G073700 ID=Potri.017G073700.1.v4.1 annot-version=v4.1 ATGACCATGCATGAAAAAATGAAGCTGCCCTCTTGCTCTTGTTCTGCTTTCAAATGTGGCAAAAAGGACAGGTGGCTTAACATGGAGAGGCCTATTCCTT TCTTGTTAATAGGTTTAACGACAATTCTCAGCGTGTTCATTCTCTACACTCTAAACCCTTTGAAGTTCGTCATCGAACATAACATTGATCAAAAGCTCCT CTTGATCAAACCACACAAGGAAGAAGACAAGTGTGACTTGTTTAACGGCAACTGGGTACCTGATTTTGAAGGGTCGATATACACAAATTCCAGTTGCGCA ACAATTCCGACCTCAAAGAACTGTTTCAGAAATGGAAGGAAGGACCAAGATTTCCTTAATTGGAGATGGAAACCAGAAAGATGTGATCTTCCTAGGTTTG ATGCCACAGCCTATTTAGACATCGTTCGAGGAAAGACACTGGCATTTATCGGTGACTCTGTTGCTAGGAACCATATCGAATCACTTCTATGTCTCTTGTC CCAGAAGGAAGTTCCTGTAGATGCATATTTGGATTCTGAAGATAGGAACCGGATTTGGCACTTTCCTGTCCATAACTTCACCCTTAAAATGCTCTGGACA AAATTCCTTGTGCATGGAGAGGAGAGAGTGATCAACGGTTCATCATCTGGCATTTTTGACTTGTATCTTGACAAAGTTGACGAAAACTGGGCCAGAGATC TGCATAGCCTAGATTATGTTGTCATCTCTGATGCACATTGGTTCTTCAGACAGGTATACTTACACAGAGGTTCTAATGTAGTTGCATGTGTTTACTGCAA CGAAGCAAACGTCACTGACCGAGGCGTTGCATTTGCCCTCAGAATGGCATTCCGAGCTGCATTTAGTCAAATTAATCACTGCAATAAGTGCAAGGGCATA GTCACATTGTTAAGGACATTCTCTCCATCCCATTTTGAGAACGGATTTTGGAACACTGGAGGAAGCTGCAACAGGACTAGTCCTTACAACGACCAGAAGA TTAATTTTGGAGCTTACGAGTGGGAAATTAGGAGCATGCAGGTAGAAGAGATTGAACGAGCAGAGAAGAGAGGGAAGAAAGGGAAGAGCTTTGGGGTTTT GGACGTCACCATGGCTATGCTGATGAGACCTGACGGGCACCCTGGAGCTTTCTGGGGTAATCAATGGATGAAGGGTTATAATGACTGTGTTCATTGGTGC CTGCCAGGTCCGATTGATGTGTGGAATGATCTCTTGCTGGCTGTTCTCAGGCGGCTGGATTAA
AA sequence Show only first row Show all	>Potri.017G073700.1 pacid=42814370 polypeptide=Potri.017G073700.1.p locus=Potri.017G073700 ID=Potri.017G073700.1.v4.1 annot-version=v4.1 MTMHEKMKLPSCSCSAFKCGKKDRWLNMERPIPFLLIGLTTILSVFILYTLNPLKFVIEHNIDQKLLLIKPHKEEDKCDLFNGNWVPDFEGSIYTNSSCA TIPTSKNCFRNGRKDQDFLNWRWKPERCDLPRFDATAYLDIVRGKTLAFIGDSVARNHIESLLCLLSQKEVPVDAYLDSEDRNRIWHFPVHNFTLKMLWT KFLVHGEERVINGSSSGIFDLYLDKVDENWARDLHSLDYVVISDAHWFFRQVYLHRGSNVVACVYCNEANVTDRGVAFALRMAFRAAFSQINHCNKCKGI VTLLRTFSPSHFENGFWNTGGSCNRTSPYNDQKINFGAYEWEIRSMQVEEIERAEKRGKKGKSFGVLDVTMAMLMRPDGHPGAFWGNQWMKGYNDCVHWC LPGPIDVWNDLLLAVLRRLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.017G073700 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	6.85	0.8764
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.001G234200 [exp]	12.24	0.8416
AT1G28390			Protein kinase superfamily pro...		Potri.005G158600 [exp]	13.26	0.8658
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	13.78	0.8627
AT2G31130			unknown protein		Potri.004G055300 [exp]	16.91	0.8451
AT4G21740			unknown protein		Potri.001G371800 [exp]	18.46	0.8296
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058500 [exp]	21.44	0.8012
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.014G120000 [exp]	22.97	0.8191
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143700 [exp]	23.93	0.8668
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	25.65	0.8616

Compare expression of checked genes

Potri.017G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.