Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40190 247 / 1e-84 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT3G28140 219 / 2e-73 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350300 [exp] 350 / 3e-125 AT5G40190 264 / 3e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039477 [exp] 310 / 2e-109 AT5G40190 266 / 3e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10039437 [exp] 308 / 7e-109 AT5G40190 265 / 8e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10032164 [exp] 295 / 2e-103 AT5G40190 254 / 3e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10014523 [exp] 294 / 4e-103 AT5G40190 255 / 1e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [poplar] [flax] 2H PF13563 [poplar] [flax] 2_5_RNA_ligase2 2'-5' RNA ligase superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G073800.1 pacid=42814441 polypeptide=Potri.017G073800.1.p locus=Potri.017G073800 ID=Potri.017G073800.1.v4.1 annot-version=v4.1 ATGTCACAGGGCGGTTATGCTATTGAACTGTACTTGGATCCAGCACTCGAAAACCAGGTGTTGAAGGCCTGGAACGTGCTAGCTCGACGCCAAATAAGCA GCCAATTAATTGAAATCGAGTCTCGCCCTCATTTAACCTTGTATTCAGCTCCCTTCATTGATCCCACTAAGCTTGAATCAATCATCAAGACTTTCGCATC TAAGCAAGAACCATTACCCTTATCTCTCTCCACCATAGGTTGCCACAACAATCTCCTCTTCTTGGCCCCTACGCCTACTCTTTCTCTTCTTCAATTCCAT TCTCAGTTATGTGATGCGATGAGGAGGGAGGGTATTGAGATTAGTGAAGACTATCGCCCCGAAAATTGGATTCCTTATTGTGCAGTTGCTCAGGATGTCC CAAAGGCAAGAATGGCCGAGTCTTTATGTGTTTTGAGAGATTTGAAATTGCCCGTTGCTGGGTATGCAATGGATATTGGGTTAGTGGAGTTTTCGCCCGT TCGAGAGTTCTTTTCGTTCGTGCTTGGTAACACAGTAGAAGGATGA
AA sequence Show only first row Show all	>Potri.017G073800.1 pacid=42814441 polypeptide=Potri.017G073800.1.p locus=Potri.017G073800 ID=Potri.017G073800.1.v4.1 annot-version=v4.1 MSQGGYAIELYLDPALENQVLKAWNVLARRQISSQLIEIESRPHLTLYSAPFIDPTKLESIIKTFASKQEPLPLSLSTIGCHNNLLFLAPTPTLSLLQFH SQLCDAMRREGIEISEDYRPENWIPYCAVAQDVPKARMAESLCVLRDLKLPVAGYAMDIGLVEFSPVREFFSFVLGNTVEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.017G073800 [exp]	0	1
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	1.00	0.8953
AT2G20690			lumazine-binding family protei...		Potri.013G131800 [exp]	7.74	0.8353
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	9.79	0.8334
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.019G121400 [exp]	10.19	0.7977
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	13.07	0.8150
AT3G21860		ASK10	SKP1-like 10 (.1)		Potri.005G094800 [exp]	13.41	0.7819
AT5G63150			unknown protein		Potri.012G090700 [exp]	13.74	0.8171
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	15.49	0.8101
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G138500 [exp]	16.30	0.8597
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Potri.007G127500 [exp]	19.07	0.8126	FTA.1

Compare expression of checked genes

Potri.017G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.