Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1672 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT3G26720 277 / 4e-78 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 272 / 1e-75 Glycosyl hydrolase family 38 protein (.1) AT5G13980 268 / 4e-75 Glycosyl hydrolase family 38 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350400 [exp] 2003 / 0 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 542 / 0 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 285 / 2e-80 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.014G143600 [exp] 270 / 4e-75 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 259 / 2e-71 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 257 / 8e-71 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014507 [exp] 1552 / 0 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10039457 [exp] 1543 / 0 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 1536 / 0 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10032179 [exp] 1312 / 0 AT5G14950 1265 / 0.0 golgi alpha-mannosidase II (.1) Lus10035111 [exp] 270 / 3e-75 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 259 / 2e-71 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10012577 [exp] 241 / 3e-65 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 239 / 7e-65 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 208 / 5e-55 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 164 / 4e-41 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [poplar] [flax] GH_CE PF01074 [poplar] [flax] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [poplar] [flax] Gal_mutarotase PF07748 [poplar] [flax] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [poplar] [flax] GH57_38_middle PF09261 [poplar] [flax] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Potri.017G073900.1 pacid=42814261 polypeptide=Potri.017G073900.1.p locus=Potri.017G073900 ID=Potri.017G073900.1.v4.1 annot-version=v4.1 ATGTCTTTCTCCTCCTACACTGGAAGTGGTGGCAACACTCGCCGTGGCAACATCTGGCCCAACTCGTCTCCTCTACCCACCACCTCTCCCACCCCGACCA AATCAAAACACCCATCAAGAAAGTCACGCAAAGGGACGGCTCTGATTAATTTCATATTCTCAAACTTCTTCACCATCGCTCTCTCCATCTCTCTCTTGTT CCTTCTAATAACAATCCTCCTCTTTGGTGTCCCAAATCCCCTCATCTCCTCTCCTTTTAAATCAAAGCCTCCTCCTTCTTTCAAGGTCCGGAATCGAAAG CCCCCTCAAAAAGACAATAACAGAAACAAGAACAATAACAGCATCAACGAAGGCGGTGGTGGGGCTACTGTGGATATAACCACAAAGGGTTTGTATGATA GAATCCAGTTCTTGGATGAGGATGGTGGGCCGTGGAAGCAAGGGTGGAGAGTGAGCTACAAAGGGAACGAATGGGATAGTGAGAAATTGAAGGTTTTTGT GGTGCCTCATTCACATAATGATCCAGGCTGGAAGCTAACTGTGGAGGAGTATTATGATAGGCAAACAAGGCATATACTTGATACAATCGTCCACACACTT TCCAAGGATTCTCGTCGGAAATTCATATGGGAAGAGATGTCTTATTTGGAGAGATGGTGGAGGGACGCAACTGTGGAGAAAAGAGAATCCTTTACCAATT TAGTCAAGGCAGGCCAGTTGGAAATTGTTGGGGGCGGTTGGGTAATGAATGATGAGGCTAATTCTCATTTTTTTGCCATAATCGAGCAGATTACAGAGGG GAATATGTGGTTGAATGACACCATTGGGGTTGTTCCTAAGAATTCGTGGGCAATAGATCCATTTGGTTACTCTCCTACCATGGCCTATCTGCTCCGTCGT ATGGGTTTCGAGAACATGCTTATTCAAAGGACCCACTATGAGCTGAAGAAGGAACTTGCTTTGCGAAAGAATTTAGAATACGTTTGGCGTCAAAACTGGG ATGCTGAGGAAAGCACTGATATTTTTGCACACATGATGCCCTTCTATTCCTATGATATTCCTCATACTTGTGGACCAGAGCCTGCTATTTGTTGTCAATT TGATTTCGCTCGAATGCATGGCTTTAATTATGAATTGTGCCCTTGGGGCGAACATCCAGTGGAAATCAACCATGAAAATGTACAGGAGAGAGCCGTAAAG TTACTGGATCAATACAGGAAGAAATCAACTCTGTACCGGACTAATACTCTCCTTGTTCCTCTCGGTGATGATTTCCGCTACATCAATATTGATGAAGCAG AAGCTCAGTTTCGGAATTACCAAATGTTATTTGATTACATCAACTCTAATCCTAGTTTAAATGCAGAGGCAAAATTTGGTACTTTGGAAGATTACTTTCG CACTCTTCGTGAAGAGGTTGATAGGATAAATTATTCTCTTCCTGGAGAGGTTGGCTCTGGTCAGATAGGGGGTTTTCCATCTCTATCAGGTGACTTCTTT ACTTATGCTGATAGGCAACAGGACTATTGGAGTGGCTATTATGTTTCAAGGCCTTTCTTTAAGGCTGTTGATCGGGTACTAGAGCAAACACTTCGTGCTG CTGAAATAATGATGGCTTTGTTGCATGGTTATTGCCAGAGAGCACAATGTGAAAAATTGGCCACAGGATTTGCCTACAAGATGACTGCTGCAAGGAGGAA TTTAGCTCTTTTCCAACATCACGATGGGGTAACTGGCACTGCTAAGGATCATGTAGTTTGGGACTATGGAACTCGCATGCATACTTCTTTACAGGACTTG CAAATTTTCATGTCCAAAGCTATTGAAGTACTTCTTGGTATTCGCCATGATAAATCTGACCATAACCCATCCCAGTTTGAGTCGGAACAGGTGAGATCTA AATATGATGTTCAGCCAGTACATAAGGCAATCGGTGCTCGCGAAGGAACTTCACAATCTGCTGTGTTTTTTAATCCCTTGGAGCAAAGTAGAGAAGAAAT TGTGATGCTTATTGTTAACAGGCCAGATGTCACTATTCTGAATTCAAACTGGACTTGTGTCCCAAGTCAAGTGTCCCCTGAATTGCAGCACGATAAAAGC AAAACTTTTACTGGAAGGCATCGTGTCCACTGGAAAGCTTCTGTTCCTGCCATGGGGTTGCAAACATATTATGTTGCCAATGGTTTTGTGGGATGTGAAA AAGCAAAACCAGCAAAACTTAAATACTTCTCGATGTCCAATTCGTTTTCTTGCCCTGCTCCGTATGATTGCTCCAAAATTGAAGGTGGCGTGGCTGAGAT TCAGAATCAACATCAAACTCTCACCTTTGATATCAAGCATGGTCTGCTGCGGAAAGTAACTCATAAAGATGGTTCCATAAATGATGTGGGTGAAGAAATA GGAATGTACTCTAGTTATGGAAGTGGGGCCTACCTTTTCAAACCCAATGGTGATGCTCAGCCTATCATTGAGGCTGGTGGGCACATGGTGATATCTGAGG GTCTAATGGTGCAGGAAGTGTACTCGTATCCTAAAACGACTTGGGAGAAAACCCCCATCTCCCATAGCACTCGAATTTACAATGGAGATAATACTGTAGG AGAATTGCTTATCGAGAAAGAATACCATGTTGAGCTTCTTGGCCAAGATTTTAATGACAGGGAATTGATAGTTAGATACAAGACAGATCTTGATAATAGA AGGATTTTCTATTCTGATTTAAATGGCTTTCAGATGAGCAGGAGAGAAACTTATGATAAGATTCCCATGCAGGGCAATTACTATCCTATGCCCTCTCTAG CATTCATGCAAGGATCCAATGGTAAGAGGTTTTCTGTCCATTCTAGACAGTCACTGGGTGTGGCCGGCCTTAAAGAAGGATGGTTAGAGATTATGCTTGA TCGTCGTTTGCTAAGAGATGATGGACGTGGTCTTGGGCAAGGAGTGATGGATAATCGCCCAATGAATGTGATCTTTCACATCCTTTTTGAGTCTAACATT TCTTCCACTTCTAATCCTGTTTCCAATCCTCTTCCCCTGAGCCCTTCTCTTCTCTCTCACTGTGTTGGTGCTCGCTTGAATTATCCATTACATGCATTTG TTGCGAAGAACCCCCAGGAGTTATCTATGCAACCACCTCCTAGATCCTTCTCACCTTTAGCAGCTCCCTTGCCTTGTGACTTGCATATTGTGAATTTTAA AGTTCCCCGGCCATCAAAATATTCTCAGCAGGTGACTGGAGATTCTAGGTTTGTCCTGATATTACAGAGGAGACATTGGGATACTTCATACTGTCAAAAT TGTCATTCTCAGTGCACCAGTGTCGCTAATAAACCTGTGAATCTTTTCAACATGTTCAAGGAGCTTGAGGTGTTGAATGTGAAGGCAACTTCTTTGAATC TTTTGCACGAAGACATAGAGATGCTTGGATATATGGAGCAGGTTGGGGATGTAGGTCAAGAGGGACACGTATTCATCCCTCCCATGGAAATACAAGCATA CAAGTTGGTATTGCGGCCTCACCAGTGA
AA sequence Show only first row Show all	>Potri.017G073900.1 pacid=42814261 polypeptide=Potri.017G073900.1.p locus=Potri.017G073900 ID=Potri.017G073900.1.v4.1 annot-version=v4.1 MSFSSYTGSGGNTRRGNIWPNSSPLPTTSPTPTKSKHPSRKSRKGTALINFIFSNFFTIALSISLLFLLITILLFGVPNPLISSPFKSKPPPSFKVRNRK PPQKDNNRNKNNNSINEGGGGATVDITTKGLYDRIQFLDEDGGPWKQGWRVSYKGNEWDSEKLKVFVVPHSHNDPGWKLTVEEYYDRQTRHILDTIVHTL SKDSRRKFIWEEMSYLERWWRDATVEKRESFTNLVKAGQLEIVGGGWVMNDEANSHFFAIIEQITEGNMWLNDTIGVVPKNSWAIDPFGYSPTMAYLLRR MGFENMLIQRTHYELKKELALRKNLEYVWRQNWDAEESTDIFAHMMPFYSYDIPHTCGPEPAICCQFDFARMHGFNYELCPWGEHPVEINHENVQERAVK LLDQYRKKSTLYRTNTLLVPLGDDFRYINIDEAEAQFRNYQMLFDYINSNPSLNAEAKFGTLEDYFRTLREEVDRINYSLPGEVGSGQIGGFPSLSGDFF TYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEIMMALLHGYCQRAQCEKLATGFAYKMTAARRNLALFQHHDGVTGTAKDHVVWDYGTRMHTSLQDL QIFMSKAIEVLLGIRHDKSDHNPSQFESEQVRSKYDVQPVHKAIGAREGTSQSAVFFNPLEQSREEIVMLIVNRPDVTILNSNWTCVPSQVSPELQHDKS KTFTGRHRVHWKASVPAMGLQTYYVANGFVGCEKAKPAKLKYFSMSNSFSCPAPYDCSKIEGGVAEIQNQHQTLTFDIKHGLLRKVTHKDGSINDVGEEI GMYSSYGSGAYLFKPNGDAQPIIEAGGHMVISEGLMVQEVYSYPKTTWEKTPISHSTRIYNGDNTVGELLIEKEYHVELLGQDFNDRELIVRYKTDLDNR RIFYSDLNGFQMSRRETYDKIPMQGNYYPMPSLAFMQGSNGKRFSVHSRQSLGVAGLKEGWLEIMLDRRLLRDDGRGLGQGVMDNRPMNVIFHILFESNI SSTSNPVSNPLPLSPSLLSHCVGARLNYPLHAFVAKNPQELSMQPPPRSFSPLAAPLPCDLHIVNFKVPRPSKYSQQVTGDSRFVLILQRRHWDTSYCQN CHSQCTSVANKPVNLFNMFKELEVLNVKATSLNLLHEDIEMLGYMEQVGDVGQEGHVFIPPMEIQAYKLVLRPHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.017G073900 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	7.68	0.8643
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	8.66	0.8584
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	9.00	0.8598
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	11.31	0.8611
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	12.72	0.8567
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.014G046000 [exp]	13.45	0.7648
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.013G020500 [exp]	14.00	0.8556
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	14.07	0.8475
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	16.00	0.8597	Pt-SPY.2
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	20.00	0.8535

Compare expression of checked genes

Potri.017G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.