Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) AT3G63240 299 / 1e-95 DNAse I-like superfamily protein (.1) AT5G04980 280 / 4e-89 DNAse I-like superfamily protein (.1.2) AT2G01900 265 / 5e-84 DNAse I-like superfamily protein (.1) AT2G32010 266 / 1e-82 CVL1 CVP2 like 1 (.1.2) AT1G05470 263 / 7e-81 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 257 / 2e-80 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT4G18010 243 / 3e-73 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 234 / 3e-70 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 229 / 5e-68 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050000 [exp] 329 / 6e-107 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 328 / 1e-106 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G011000 [exp] 302 / 9e-98 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 296 / 6e-95 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G101700 [exp] 294 / 1e-94 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 292 / 7e-94 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 275 / 1e-87 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 275 / 3e-87 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 270 / 5e-84 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025305 [exp] 309 / 9e-100 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 305 / 4e-98 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 303 / 8e-98 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 315 / 2e-96 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 290 / 9e-93 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 267 / 4e-85 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 267 / 9e-83 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 268 / 1e-82 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 255 / 2e-82 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10042619 [exp] 263 / 4e-80 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.017G074200.3 pacid=42813006 polypeptide=Potri.017G074200.3.p locus=Potri.017G074200 ID=Potri.017G074200.3.v4.1 annot-version=v4.1 ATGGACATTGAGAACCGGAAGTCAAAAACTAGTAGAATTCGCGAGTGGTTTAAGAGAAAGAACAAGAGAGCCGACGCATATCAATGGAATGAAGTTTCAG ATGACAGTGAGGACGATAGCCTGGATGATGACCTCGTTAGATCGTTGGAGATAGATCCATGCATCTTTACCAATGAATTGAGAATCTTTGTGGGTACATG GAATGTTGCCGGAAGATCTCCTGTTGGAAGCTTAGCCGTAGATGTGAATGAATGGCTAAATCTCAGGGATGCGGCTGATATGTATGTTCTAGGGTTTCAA GAGATTGTGCCTTTGAAAACCAAAAACGTGATAGGAGTAGAAGACCCAACTGAAGCAACAAACTGGAACTTGCTCATCGGAAAAACTCTGAACGACAAGT ATGGATGCCCCTGGTTGACCCCCATGTTGAATCCAATCTCAAGTGAAAACTATCATTTTGTTAGGTTCCCCGGTTTCGGAAGGAGGGCAAGTTTTAGCGG CCATTCTGGATTTACAGGGCCGGAGCTATCAAAGGCACAGCATGAAGGGGAGGCATATGGGGGCAGCAAATATAAGCTAATGGCAAGCAAGAAGATGGTT GGAGTGTTTATAAGTGTATGGATGAAGAAGGAATTTCTCACGAAGTACTGCATTTCAGATGTTAAGGTTTCTTCCGTGGCTTGTGGCATCATGGGATACT TGGGGAATAAAGGTTCAGTTTCAGTTAGTATGTCTATTGAAGGAACCAGCTTTTGCTTCATTGCTGCTCACTTGGCTTCCGGCGAGAAGAGAGGTGATGA AGGCAGGAGGAATCACCAAGTCTCAGAGATTTTCAGAAGAACTTCATTCCCCCGTTCTTCTGAAGATGATGACAATCCTCATCCTATCACCATCCTAGGA CACGATCGTATATTCTGGTTCGGAGATCTCAACTATCGGCTGTACCAAGACAACATTTTGGCCAAGGAATTCATAAAGAAGCAAGATTGGAAAGCATTGC AGGAATTTGATCAGCTCCGAAAGGAACTGGAAGATGGAGGAGTGTTCGAAGGTTGGAGAGAAGGGAACATAGAATTCGCACCAACATACAAATACTCCTC GGCAAATTGCAATCGGTACACGGCTGGCCTGCCAGGCAGATCAGGAGAGAAGCAAAGAACTCCAGCATGGTGTGACAGAATACTGTGGTATGGAAAAGGA GTGAGGCAACTTTCCTATTTTCGAAGTGAAAGCAAGTTCTCTGACCACCGGCCAGTTTCTGCACTCTTTTCTATACCAATAGAAGTCATGAAGGTTACCA ATCCGAGAAAGGTTTTTCCTACAGGCACCTTTCTGCCCATGCCTTCCGGGAAACTGGAGCCAATCGATAGCAAAGGAGGGGCCAGATCTACCTTGCTATC ACTGATTTCCAAGGAATCAGTAAAGGGTATAGGATCATTGCCATAA
AA sequence Show only first row Show all	>Potri.017G074200.3 pacid=42813006 polypeptide=Potri.017G074200.3.p locus=Potri.017G074200 ID=Potri.017G074200.3.v4.1 annot-version=v4.1 MDIENRKSKTSRIREWFKRKNKRADAYQWNEVSDDSEDDSLDDDLVRSLEIDPCIFTNELRIFVGTWNVAGRSPVGSLAVDVNEWLNLRDAADMYVLGFQ EIVPLKTKNVIGVEDPTEATNWNLLIGKTLNDKYGCPWLTPMLNPISSENYHFVRFPGFGRRASFSGHSGFTGPELSKAQHEGEAYGGSKYKLMASKKMV GVFISVWMKKEFLTKYCISDVKVSSVACGIMGYLGNKGSVSVSMSIEGTSFCFIAAHLASGEKRGDEGRRNHQVSEIFRRTSFPRSSEDDDNPHPITILG HDRIFWFGDLNYRLYQDNILAKEFIKKQDWKALQEFDQLRKELEDGGVFEGWREGNIEFAPTYKYSSANCNRYTAGLPGRSGEKQRTPAWCDRILWYGKG VRQLSYFRSESKFSDHRPVSALFSIPIEVMKVTNPRKVFPTGTFLPMPSGKLEPIDSKGGARSTLLSLISKESVKGIGSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37440			DNAse I-like superfamily prote...		Potri.017G074200 [exp]	0	1
AT3G17760		GAD5	glutamate decarboxylase 5 (.1....		Potri.012G039000 [exp]	2.82	0.6984
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	6.63	0.7311
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026700 [exp]	8.48	0.6837	Pt-AG12.3
AT5G66815			unknown protein		Potri.014G034500 [exp]	10.24	0.7188
					Potri.003G056450 [exp]	12.24	0.7080
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.006G046000 [exp]	18.76	0.6212
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123700 [exp]	20.71	0.6745
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	20.78	0.6661
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	23.91	0.6806
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	27.20	0.6823

Compare expression of checked genes

Potri.017G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.