Plant FIBer expression Database

Potri.017G074300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19010 124 / 4e-31 unknown protein
AT1G74860 124 / 8e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G350000
[exp]
822 / 0 AT1G19010 106 / 3e-25 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036649
[exp]
205 / 5e-58 AT1G74860 145 / 3e-38 unknown protein
Lus10033128
[exp]
198 / 5e-55 AT1G74860 147 / 1e-38 unknown protein
Lus10036648
[exp]
55 / 1e-07 ND /
PFAM info
Representative CDS sequence
>Potri.017G074300.1 pacid=42813280 polypeptide=Potri.017G074300.1.p locus=Potri.017G074300 ID=Potri.017G074300.1.v4.1 annot-version=v4.1
ATGGCAGAATCAGAGAAACTGGTGGCGTTGAAAAAAGCATATGCAGATATAATATTGAATACAGCAAAAGAGGCAGCAAGCAGAGTAATGGAGTCGGAGC
GAAAAGGCCTTCGCTATCACCACGATCTCTGCAGTTCAAAAGACGAGGCGCTTCGATTACTTCTTCGCTTAAAGCAAATGATCGATGCCAAAGCAATTGA
AGCAGAGATAACATCCGCAAGCCAACAGAGTAAGATTGATGAGCTTGACGCGCAGCTCCAGGAGGCAGAGGGTGTCATAATAGATCTTAGAGCAGAGTTG
AGATGGGTACGTGATGAGCTAGAGAAGGTAAGGAACAGCCAAGTCCAACCTTCGAATGGAGAAGCTGTGAAGGAAAATGAATCTTCTCACCAACGTTTAA
CATCTGAGCCCATTGTACTCTCTCTTTCTAATTTGCCACCTCAAACTGTGGCAACTTCTAATGTAAAGAGTACACTACTGGATCGGAGAAATTTCAACAA
GTGCTGCAACACAGTAGATCAGCAATTGAGTGTTTCACCTTTGGAGAACTATTCTTCACGTAATGCAGACTTAGCCTCCATTACTATGGCAAACAAGGAG
CCGGAGTTGTATAGAAATGGTTGTACGCAGAGAATTCGTGCATCTGAAGGAAATGCGTTTGCTAGCAAATTGCCTCCTTCAGATGTAGGAGTGGAGCAGC
AATCACTCATAAAGAATGAGGTTATTGTCAAAGCAAGTAATGGGGATGAAGGTAAATGTACTGAAACTTCTCCCAAGACTAAGAACGTGGGGAAAATGAA
CTTTTCAGGGGAAGAAGTAAGAAACCATGTCAAGGTTTGCTCATCAAGACAGAAAAGGGGGAGGTTTGCCAAAGCTAAGCGCAAGTCCTGTCCCATTGTC
AGAAAACCTTATCAACCACCTTCTATTGTTTCTCGTCGTAAGACAAACTCAGTAAATGGCACTGTTAAATCTGATCAACATTTGTGTACCTTACCCCCTG
TCAAGCCTAGCAATCAGGATATGAAGAAGAATCCCATTGAGCTGGAAGAAGAATTGCTGGAAACAAATGACTGCCTTACTGCTGAAATGATTGTTCCTGA
AGGGAAAAGACCAAGAACAGAACGAATTACAACTTCTGGCTCTTCCTCGTCCTCGTCCCCTTCGGTTCAACACTCAGAATTTTGTCAAAAACCTTTTGTT
CTCACTCCTTGCAAGAATTACTCGTTTTTGCTCCATGGTAATGTTAAATCTGACGAAGACGAGTCAAAGATAACTGAAAATGTTGTCAAGCTGAAGCCAC
TACCTAGCTTGGGTCCTGTTTTAACACTAATTAGAGGTGGTTTGGATTCAATATGTGGCTCTACAAATGTTGAAGTGAGTGTAAAGGCACTCTGTGGATC
CGTTGAGGACACTGATGCAGACAAGGACATGGACTTTGTAGATGAATTGGCAAAAGAAGAACTCGATTCTAACCAGAGTCCTATAGTTCCAAGTTATGAA
TCAAATGCTCAGATGATCAATGTACCAATTGTATTTTCTAATTTGAAAGATGCCAAAACATCCGAAGAAATTACTGTTAGTGTACCGCTGGTGCCCTCTG
ATATAAAAGTTGCCAAATCATCCTTGGAATCTAATTTGTTTCCTAGTCAATCAGACAATAGGCTTCTTAAATACACCTTTCAGAGGAAGCACAAGAAGGA
AGCTGTGAGCAGCTCTGATAACAACGCTTCTGGCGAGAAGAACATATTAAAAAGGAAAGCAGAGGAAAAGCCAGAAGATTAA
AA sequence
>Potri.017G074300.1 pacid=42813280 polypeptide=Potri.017G074300.1.p locus=Potri.017G074300 ID=Potri.017G074300.1.v4.1 annot-version=v4.1
MAESEKLVALKKAYADIILNTAKEAASRVMESERKGLRYHHDLCSSKDEALRLLLRLKQMIDAKAIEAEITSASQQSKIDELDAQLQEAEGVIIDLRAEL
RWVRDELEKVRNSQVQPSNGEAVKENESSHQRLTSEPIVLSLSNLPPQTVATSNVKSTLLDRRNFNKCCNTVDQQLSVSPLENYSSRNADLASITMANKE
PELYRNGCTQRIRASEGNAFASKLPPSDVGVEQQSLIKNEVIVKASNGDEGKCTETSPKTKNVGKMNFSGEEVRNHVKVCSSRQKRGRFAKAKRKSCPIV
RKPYQPPSIVSRRKTNSVNGTVKSDQHLCTLPPVKPSNQDMKKNPIELEEELLETNDCLTAEMIVPEGKRPRTERITTSGSSSSSSPSVQHSEFCQKPFV
LTPCKNYSFLLHGNVKSDEDESKITENVVKLKPLPSLGPVLTLIRGGLDSICGSTNVEVSVKALCGSVEDTDADKDMDFVDELAKEELDSNQSPIVPSYE
SNAQMINVPIVFSNLKDAKTSEEITVSVPLVPSDIKVAKSSLESNLFPSQSDNRLLKYTFQRKHKKEAVSSSDNNASGEKNILKRKAEEKPED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19010 unknown protein Potri.017G074300
[exp]
0 1
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.016G049900
[exp]
2.44 0.9273
Potri.006G225133
[exp]
4.00 0.8974
AT1G07410 ATRAB-A2B, AtRA... ARABIDOPSIS RAB GTPASE HOMOLOG... Potri.016G000400
[exp]
4.69 0.8484 RAB11.7
AT4G02440 EID1 EMPFINDLICHER IM DUNKELROTEN L... Potri.002G205150
[exp]
7.14 0.8561
AT1G64070 RLM1 RESISTANCE TO LEPTOSPHAERIA MA... Potri.006G284000
[exp]
7.74 0.8926
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Potri.002G257400
[exp]
8.12 0.8632
AT4G27190 NB-ARC domain-containing disea... Potri.001G446966
[exp]
9.64 0.8417
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
10.24 0.8941
AT5G36930 Disease resistance protein (TI... Potri.002G056100
[exp]
15.62 0.8120
AT2G06000 Pentatricopeptide repeat (PPR)... Potri.006G141800
[exp]
17.54 0.8306

Potri.017G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.