Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28450 761 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 716 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 676 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 464 / 6e-157 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G55610 277 / 4e-81 BRL1 BRI1 like (.1.2) AT5G07280 276 / 1e-80 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 275 / 2e-80 BRL3 BRI1-like 3 (.1) AT4G39400 275 / 3e-80 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G45780 251 / 4e-75 Leucine-rich repeat protein kinase family protein (.1) AT2G02220 258 / 8e-75 ATPSKR1 phytosulfokin receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349900 [exp] 955 / 0 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 763 / 0 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 759 / 0 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 513 / 3e-176 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 494 / 1e-168 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 489 / 5e-167 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 488 / 1e-166 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 366 / 3e-119 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 345 / 2e-110 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 719 / 0 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 484 / 4e-165 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 478 / 3e-162 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10013288 [exp] 369 / 8e-125 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 289 / 3e-85 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 285 / 1e-83 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 282 / 7e-83 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 281 / 1e-82 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 257 / 1e-74 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 248 / 5e-74 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G074400.1 pacid=42813167 polypeptide=Potri.017G074400.1.p locus=Potri.017G074400 ID=Potri.017G074400.1.v4.1 annot-version=v4.1 ATGAAGGTTTCATCCAAGATTTGTGCTTTAAATATCATCATTGTTATTCTGGTTGCATTAAGTGTCATTAATGTTCTTGGTGAAGATGACGTGAGGTGCC TGCAAGGTGTAAAGAACTCTCTTGATAACCCAGAAGGGAAGCTGACCACATGGAACTTTGCAAACTCATCAGTTGGATTCATCTGCAATTTTGTTGGGGT TTCATGTTGGAATGATCGAGAGAACAGGATAATTAACCTCCAATTACGTGACATGAAGCTGTCAGGACAAGTTCCTGAATCATTACGGTATTGTCAAAGC CTGCAAAACTTGGATCTTTCATCTAATTCTCTCTCTGGTACGATACCTGCTCAAATATGTACCTGGGTGCCTTACTTAGTCACTCTTGATCTCTCAAATA ATGATCTTTCTGGCCCTATACCGCCTGATCTTGCAAACTGTACTTATTTGAATAAGTTGATACTATCTAATAACCGTCTCTCTGGGTCTATTCCTTTTGA ACTTTCTGGTTTGGGTAGGCTCAAGCAGTTTTCTGTGGAAAATAATGATCTTGCTGGTACAGTTCCTTCCTTCTTTACAAATCTTGATTCCGCGAGTTTT GATGGGAATAAGGGACTGTGTGGGAAGCCTTTATCAAAGTGTGGTGGGTTAAGCGAGAAGAATCTTGCCATTATAATTGCCGCCGGGGTTTTTGGTGCCG CCTCTTCTTTGTTGTTAGGATTTGGGGTGTGGTGGTGGTATCATTTGAGGTATTCTGAGAGGAAGAGAAAGGGAGGGTATGGCTTTGGAAGAGGTGATGA TACTAGTTGGGCACAGAGATTGAGGTCTCACAAGCTTGTTCAAGTTTCTTTGTTTCAAAAGCCTCTAGTGAAGGTTAAATTGGCTGATTTAATAGCTGCT ACAAACAATTTTAGTCCAGACAATATCATCATTTCAACTAGAACGGGCACTACTTACAAGGCTGTTCTTCCTGATGGATCGGCTCTTGCACTCAAGCGTC TTACTACTTGTAAGCTCGGTGAGAAGCAGTTTCGTTCAGAGATGAATCGATTAGGCCAGATCAGGCATCCAAATCTGGCACCCCTTTTGGGGTTTTGTGT TGTGGAGGAGGAGAAGCTTTTGGTTTATAAGCACATGTCTTATGGGACTTTGTATTCTTTGCTCCATGGGTCCGGTAATGCACTGGATTGGTCAACAAGA TTCAGGATTGGTTTGGGTGCTGCTAGGGGTCTAGCTTGGCTTCATCATGGGTGCCAGCGTCCATTCCTGTATCAGAACATGTGTTCCAATGTGATTCTTG TTGATGAAGATTTTGATGCTCGGATTATGGACTTTGGATTGGCAAAGATGACTTGCTCAGACTCTAATGAGAGCAGTTATGTTAATGGGGATTTAGGAGA ATTCGGTTATGTGGCACCAGAGTACTCAAGCACTATGGTTGCTTCCCTCAAAGGAGACGTTTATGGATTTGGGGTGGTGCTTTTGGAGCTGGTGACAGGG CAAAAACCTCTCGACATCAGCAATGCTGAAGAAGGATTCAAAGGGAGCTTGGTGGATTGGGTAAATCACCTCTCAAGTTCTGGTAGAAGCAAAGACGCAG TTGACAAGGCTATCTGTGGCAAGGGACACGATGAGGGAATTTACCAGTTCCTAAAAATTGCTTGTAATTGTGTCATTGCTCGGCCCAAGGACAGATGGTC TATGTACAAGACTTACCAATCCTTAAAGACGATTGCCAGTGAGCATCATGTTTTGTCAGAGCTAGATGATGAATTTCCATTGATTTTTGGCAAACAAGAT TATGATTAA
AA sequence Show only first row Show all	>Potri.017G074400.1 pacid=42813167 polypeptide=Potri.017G074400.1.p locus=Potri.017G074400 ID=Potri.017G074400.1.v4.1 annot-version=v4.1 MKVSSKICALNIIIVILVALSVINVLGEDDVRCLQGVKNSLDNPEGKLTTWNFANSSVGFICNFVGVSCWNDRENRIINLQLRDMKLSGQVPESLRYCQS LQNLDLSSNSLSGTIPAQICTWVPYLVTLDLSNNDLSGPIPPDLANCTYLNKLILSNNRLSGSIPFELSGLGRLKQFSVENNDLAGTVPSFFTNLDSASF DGNKGLCGKPLSKCGGLSEKNLAIIIAAGVFGAASSLLLGFGVWWWYHLRYSERKRKGGYGFGRGDDTSWAQRLRSHKLVQVSLFQKPLVKVKLADLIAA TNNFSPDNIIISTRTGTTYKAVLPDGSALALKRLTTCKLGEKQFRSEMNRLGQIRHPNLAPLLGFCVVEEEKLLVYKHMSYGTLYSLLHGSGNALDWSTR FRIGLGAARGLAWLHHGCQRPFLYQNMCSNVILVDEDFDARIMDFGLAKMTCSDSNESSYVNGDLGEFGYVAPEYSSTMVASLKGDVYGFGVVLLELVTG QKPLDISNAEEGFKGSLVDWVNHLSSSGRSKDAVDKAICGKGHDEGIYQFLKIACNCVIARPKDRWSMYKTYQSLKTIASEHHVLSELDDEFPLIFGKQD YD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28450			Leucine-rich repeat protein ki...		Potri.017G074400 [exp]	0	1
AT5G43230			unknown protein		Potri.008G177500 [exp]	1.41	0.8968
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	6.32	0.8531
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	6.78	0.8805
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	7.07	0.8433
AT5G47530			Auxin-responsive family protei...		Potri.010G156600 [exp]	8.12	0.7862
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	9.79	0.8279
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.019G018100 [exp]	10.86	0.7509	PPCK2.2
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	12.24	0.8644
AT4G34500			Protein kinase superfamily pro...		Potri.009G115600 [exp]	12.48	0.7583
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	12.84	0.8162	LAC110b

Compare expression of checked genes

Potri.017G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.