Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 472 / 1e-163 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 464 / 5e-161 Protein of unknown function (DUF1336) (.1) AT3G29180 335 / 9e-110 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT1G13970 320 / 2e-104 Protein of unknown function (DUF1336) (.1) AT5G39430 314 / 9e-102 Protein of unknown function (DUF1336) (.1) AT5G35180 56 / 6e-08 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G24990 50 / 1e-06 Protein of unknown function (DUF1336) (.1) AT4G19040 50 / 4e-06 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT1G06050 49 / 6e-06 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040100 [exp] 500 / 6e-174 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 490 / 3e-170 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 325 / 1e-105 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 320 / 4e-104 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 57 / 2e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 54 / 3e-07 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 52 / 5e-07 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.018G014234 [exp] 45 / 5e-05 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039463 [exp] 564 / 0 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 557 / 0 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 458 / 5e-158 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 457 / 1e-157 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 332 / 6e-109 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 330 / 2e-108 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 317 / 4e-103 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 168 / 3e-50 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 143 / 7e-39 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019068 [exp] 64 / 1e-10 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.017G074800.1 pacid=42813768 polypeptide=Potri.017G074800.1.p locus=Potri.017G074800 ID=Potri.017G074800.1.v4.1 annot-version=v4.1 ATGGGAGGGTGTGCATCAAGGCCAGATAGCTGTGTTTGTTTACCATCATCAAATAAGAAGAAAAGCGGGAAGCAAAGAAGAAGAAGAAGAAGAAGAATAA TCTCAAGGCGTGTTTCTTCTCTTAAGGCTGATAAACTCAATGTTCCCGGTCAACCAGATCGCTCTTACTCCAATCCTGCTTTTCAAGGAAGCATGGATGG TGCCTGGTCTGATGCTATTTCTGTGCTTGAATCTGAATTTGATGATGAATTTTATAGTGTCTATGATGATGTTGTATCTGTTACCGAACCAGAGGATGCG TCTGTTTCGTCGCCGAGAGATTCAAATATTATGCAATCTAAAGCCAATGATTCCCGGAGTAATGATCAAGTGACTCCTGTATATGCGGATGAAGTTTCTA ATGTGAGCGTTGGAGGTCAAGAGGAGAACAATCACAGTGGGATTCTTCCAAATAATTGCTTGCCTTTCCTTGCTTCAGCTGTCGCTTCCATTGACAAGAA AAGACCATTGAGTCCAGGCACACCGAGTTCCAAGAGAAAGCCTTCTCTTAAACTTTCTTTCAAACGGAGAGAAGGGAATGTTACTAATCCGACCTTAGTT TCACCCAAGGCATTTGTGCGAAGACCTATTGCTGGTTCCTCAATCCCTTACTGCCCCACAGATAAGAAGATGACTGATTGTTGGTCACCCATTGAGCCAA GTACTTTCAAAGTTCGGGGAAAGAACTATTTTAGGGATAAGAAGAAAGATTGTGCTCCAAACTGTGCTGCATTTTATCCTTTTGGTGCTGACATTTTTCT ATCTCCGAGGAAAATTCATCACATTGCTAGATTTGTGGAACTTCCTCATGTCAACACATCCGATGAAGTTCCTGGTGTTCTTGTCGTAAATGTTCAGATA CCTCTGTATCCTGCCACAATATTTCAAAGTGAAAATGATGGAGAAGGAATGAACATGGTCCTGTATTTTAAACTGTCTGAAAGTTACTCAAAAGAGCTCC CCCCTCATTTTCAAGAGAATATCAGTAGGTTGATTAATGATGAAGTGGAGAGGGTTAGAGGGTTCCCTCTAGATACCATAGCACCATTTAGGGAAAGATT AAAAATATTGGGCCGACTAGAAAATCTAGAAGATCTTCAATTAAGCGCTACTGAAAAGAAGCTTATGAGTGCCTACAATGAGAAACCTGTGCTCTCACGT CCTCAACATGAATTCTATTTGGGAGAAAACTACTTGGAGATTGATCTGGATGTGCATAGATTTAGCTACATCTCTAGAAAAGGTCTTGAAACCTTACAAG ACAGGCTGAAGCTTTGTCTCTTGGATTTTGGCCTGACAATTCAGGGCCACAAGCCAGAAGACTTGCCTGAACATTTGTTATGTTGCATACGTCTGAATAA AGTGGACCACACCAAGTACCGTCAACTGGGGTGTTGA
AA sequence Show only first row Show all	>Potri.017G074800.1 pacid=42813768 polypeptide=Potri.017G074800.1.p locus=Potri.017G074800 ID=Potri.017G074800.1.v4.1 annot-version=v4.1 MGGCASRPDSCVCLPSSNKKKSGKQRRRRRRRIISRRVSSLKADKLNVPGQPDRSYSNPAFQGSMDGAWSDAISVLESEFDDEFYSVYDDVVSVTEPEDA SVSSPRDSNIMQSKANDSRSNDQVTPVYADEVSNVSVGGQEENNHSGILPNNCLPFLASAVASIDKKRPLSPGTPSSKRKPSLKLSFKRREGNVTNPTLV SPKAFVRRPIAGSSIPYCPTDKKMTDCWSPIEPSTFKVRGKNYFRDKKKDCAPNCAAFYPFGADIFLSPRKIHHIARFVELPHVNTSDEVPGVLVVNVQI PLYPATIFQSENDGEGMNMVLYFKLSESYSKELPPHFQENISRLINDEVERVRGFPLDTIAPFRERLKILGRLENLEDLQLSATEKKLMSAYNEKPVLSR PQHEFYLGENYLEIDLDVHRFSYISRKGLETLQDRLKLCLLDFGLTIQGHKPEDLPEHLLCCIRLNKVDHTKYRQLGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Potri.017G079400 [exp]	14.96	0.6533
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	15.49	0.6259
AT2G43120			RmlC-like cupins superfamily p...		Potri.002G231900 [exp]	21.00	0.6367	Pt-PRN.2
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	22.24	0.6112
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	24.49	0.6594
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	30.98	0.6594
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	31.40	0.6434
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	32.80	0.6595
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.015G142700 [exp]	34.58	0.5819
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	34.64	0.6095

Compare expression of checked genes

Potri.017G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.