Plant FIBer expression Database

Potri.017G075200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65650 489 / 2e-175 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
AT5G16310 482 / 2e-172 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
AT4G17510 69 / 2e-13 UCH3 ubiquitin C-terminal hydrolase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G130400
[exp]
628 / 0 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Potri.003G081000
[exp]
76 / 1e-15 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031062
[exp]
559 / 0 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10042047
[exp]
557 / 0 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10035444
[exp]
549 / 0 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10020144
[exp]
82 / 9e-18 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1)
Lus10026940
[exp]
69 / 9e-13 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence
>Potri.017G075200.1 pacid=42813986 polypeptide=Potri.017G075200.1.p locus=Potri.017G075200 ID=Potri.017G075200.1.v4.1 annot-version=v4.1
ATGTCTTGGTGCACTATTGAGTCTGACCCAGGTGTGTTCACTGAACTTATACAACAGATGCAAGTGAAAGGTGTACAGGTTGAAGAATTGTATTCATTGG
ACCTTGATTCTCTTGACAGCCTGAGACCTGTATATGGTTTGATTTTTCTTTTCAAATGGCGCCCGGAAGAAAAGGACGAGCGTGTTGTAATTACGGATCC
AAATCCTAACCTCTTTTTTGCCCGTCAGGTTATCAACAATGCTTGTGCAAGTCAAGCAATTTTGTCTATCCTCATGAACTGTCCAGATATCGACATTGGT
CCAGAATTGTCAAAGTTAAAAGAATTCACCAAGAATTTTCCACCTGAGCTCAAAGGTTTGGCTATTAATAACTGTGAAGCTATACGTGTAGCTCATAACA
GTTTTGCAAGACCTGAGCCTTTTATTCCTGAGGAGCAGAAGGCTGCCAGCCAAGAAGATGATGTGTACCATTTTATAAGTTACCTGCCTGTTGATGGAGT
GCTGTATGAACTTGATGGATTGAAAGAGGGACCCATCAGCCTTGGTCAGTGCACTGGAGGGCATGGTGATCTGGATTGGCTGCGTATGGTGCAACCAGTG
ATCCAGGAACGCATTGAAAGGCATTCCAATAGTGAGATAAGATTTAATCTCTTGGCAATAATCAAAAACAGGAAAGAAATGTACACTGCTGAACTCAAGG
ACCTCCAAAAGAAGAGGGAGCGAATTTTGCAGCAGCTTGCTGCCTTCCAGGCAGAAAGACTGGTCGACAATAGCAACTTTGAAGCTCTGAACAAATCCCT
CTCTGAAGTGAATGGTGGGATTGAGAGTGCTACAGAAAAGATTTTGATGGAGGAGGACAAATTCAAGAAGTGGAGAACAGAAAATATCCGCAGGAAGCAC
AATTATATTCCTTTTTTGTTCAACTTCCTCAAGATTCTTGCTGAAAAGAAGCAGCTGAAGCCCCTTATTGAGAAGGCGAAGCAAAAAGCCGGCGCCTCAA
AGTAG
AA sequence
>Potri.017G075200.1 pacid=42813986 polypeptide=Potri.017G075200.1.p locus=Potri.017G075200 ID=Potri.017G075200.1.v4.1 annot-version=v4.1
MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDSLDSLRPVYGLIFLFKWRPEEKDERVVITDPNPNLFFARQVINNACASQAILSILMNCPDIDIG
PELSKLKEFTKNFPPELKGLAINNCEAIRVAHNSFARPEPFIPEEQKAASQEDDVYHFISYLPVDGVLYELDGLKEGPISLGQCTGGHGDLDWLRMVQPV
IQERIERHSNSEIRFNLLAIIKNRKEMYTAELKDLQKKRERILQQLAAFQAERLVDNSNFEALNKSLSEVNGGIESATEKILMEEDKFKKWRTENIRRKH
NYIPFLFNFLKILAEKKQLKPLIEKAKQKAGASK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Potri.017G075200
[exp]
0 1
AT4G21105 cytochrome-c oxidases;electron... Potri.001G460200
[exp]
5.65 0.7363
AT4G24820 26S proteasome, regulatory sub... Potri.012G093500
[exp]
10.09 0.7310
AT2G35790 unknown protein Potri.010G219400
[exp]
10.58 0.7384
AT5G06660 Protein of unknown function DU... Potri.016G060300
[exp]
15.87 0.7119
AT3G11400 ATEIF3G1, EIF3G... eukaryotic translation initiat... Potri.010G199000
[exp]
17.88 0.7116
AT3G21060 RBL RbBP5 LIKE, Transducin/WD40 re... Potri.019G000900
[exp]
21.00 0.6791
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Potri.010G084800
[exp]
22.58 0.7153 PBD2.2
AT1G08220 unknown protein Potri.009G002000
[exp]
24.59 0.7040
AT3G02420 unknown protein Potri.017G110600
[exp]
26.51 0.6841
AT3G63000 NPL41 NPL4-like protein 1 (.1) Potri.014G135590
[exp]
31.93 0.7293

Potri.017G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.