Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15050 671 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 625 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 515 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 494 / 1e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 483 / 1e-169 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 473 / 9e-166 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 442 / 1e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 402 / 8e-139 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 384 / 1e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130300 [exp] 775 / 0 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 500 / 6e-177 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 499 / 2e-176 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 499 / 4e-176 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 494 / 4e-174 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 468 / 1e-163 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 462 / 3e-161 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 444 / 5e-155 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 401 / 4e-138 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032189 [exp] 728 / 0 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 722 / 0 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 519 / 0 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 516 / 0 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 494 / 2e-174 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 490 / 8e-173 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 463 / 7e-162 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 449 / 2e-156 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 427 / 5e-148 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 419 / 6e-145 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.017G075600.1 pacid=42813751 polypeptide=Potri.017G075600.1.p locus=Potri.017G075600 ID=Potri.017G075600.1.v4.1 annot-version=v4.1 ATGAAGAGATTGAAAAGCTACTACATGCACCTACGCCACCACCAAAACATGGAAAGGAAATGGATCTTTCCGTTAGCTATTGGCTCTATAGTCTCTCTTT TCCTCCTCTTCCTTACAGCAATCACCACCTCAGACGGCATGTCTCTGTTTCCTTTCTACCGTTCCTTCTCTTCTTTCAGCTCTAAATTTGTTGAAACTAA AATCCACCCGATACCCACTTCAAATCTCCCTCCACCCCCTCGATTTGCCTACTTAATCTCTGGCTCTGCCGGTGATGGCAGCATGTTGAAGCGGACCTTA CAAGCTCTCTACCATCCCAACAACCAATACGTTGTTCATTTGGACAGGGAATCCTCGGACGAGGAGAGATTAGATCTAAGCAATTTTGTTAAAGACCACC CTGTTTTTCTCAGGTTTGGTAACGTAAGAATGATTACTAAAGCTAATCTTGTTACCTATAGAGGACCCACTATGGTGGCTAATACATTACATGCTGCTGC TATCTTGTTGAGAGAAGGTGGGGATTGGGATTGGTTTATTAATCTTAGTGCATCTGATTATCCACTTGTCACACAGGATGATCTGTTGCACACATTTTCA TATCTGCCAAGGGATCTTAATTTTATTGATCATACAAGTAACATTGGATGGAAAGAGTTTCAAAGGGCAAAGCCGGTAATTATAGATCCGGGGTTGTATA TGACAAAGAAAGCTGATGTTTTTTGGATTACGCAGAGGAGGAGTGTCCCAACAGCATTTAAATTGTTTACAGGTTCTGCCTGGATGGCGCTGTCTCGGCC TTTTATTGATTATACCATATGGGGATGGGACAATTTACCTCGAACAGTGCTAATGTACTATGCGAACTTTATATCTTCCCCAGAAGGTTACTTCCACACT GTCATTTGCAATGCTCAAGAATTTCTAAACACCACTGTGAACAGTGACCTGCATTTCATATCTTGGGACAACCCACCGAAGCAGCATCCACATCACCTCA ACCTTGCTGACATGCAAAGGATGATCGACAGCAATGCTCCATTTGCTAGAAAGTTCCCCCAAGACGATCCTGTGCTTGACAAGATTGATTCTGAGCTCCT GTCTCGTAGTCCAGGCATGTTTACTCCTGGTGGTTGGTGCGTAGGAAGCAGGGAGAATGGGACCGATCCATGCTCTGCTATCGGTAATACAACTGTCCTG AGACCTGGCCCTGGAGCTAAAAGGTTGGAGACAATGATCAGCACTCTGCTATCAAATGAAAATTTTCGACCAAGGCAGTGCAAATAG
AA sequence Show only first row Show all	>Potri.017G075600.1 pacid=42813751 polypeptide=Potri.017G075600.1.p locus=Potri.017G075600 ID=Potri.017G075600.1.v4.1 annot-version=v4.1 MKRLKSYYMHLRHHQNMERKWIFPLAIGSIVSLFLLFLTAITTSDGMSLFPFYRSFSSFSSKFVETKIHPIPTSNLPPPPRFAYLISGSAGDGSMLKRTL QALYHPNNQYVVHLDRESSDEERLDLSNFVKDHPVFLRFGNVRMITKANLVTYRGPTMVANTLHAAAILLREGGDWDWFINLSASDYPLVTQDDLLHTFS YLPRDLNFIDHTSNIGWKEFQRAKPVIIDPGLYMTKKADVFWITQRRSVPTAFKLFTGSAWMALSRPFIDYTIWGWDNLPRTVLMYYANFISSPEGYFHT VICNAQEFLNTTVNSDLHFISWDNPPKQHPHHLNLADMQRMIDSNAPFARKFPQDDPVLDKIDSELLSRSPGMFTPGGWCVGSRENGTDPCSAIGNTTVL RPGPGAKRLETMISTLLSNENFRPRQCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.017G075600 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Potri.014G098800 [exp]	2.23	0.8910
AT5G60720			Protein of unknown function, D...		Potri.009G009500 [exp]	4.58	0.9057
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	7.48	0.8859
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	8.83	0.9040
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	11.48	0.8800
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	13.07	0.8967
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	15.87	0.8887
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	16.52	0.8878
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	19.89	0.8543
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	20.78	0.8950

Compare expression of checked genes

Potri.017G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.