Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39980 1047 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 216 / 2e-61 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 205 / 3e-56 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G62910 201 / 5e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 201 / 6e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 198 / 7e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 197 / 1e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 191 / 2e-52 RPF2 rna processing factor 2 (.1) AT3G23020 193 / 4e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 189 / 6e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166200 [exp] 197 / 1e-53 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 196 / 3e-53 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.016G025600 [exp] 194 / 4e-53 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 194 / 2e-52 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 192 / 3e-52 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 190 / 3e-52 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G092100 [exp] 192 / 1e-51 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G078900 [exp] 191 / 2e-51 AT3G23020 1046 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 184 / 7e-50 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041429 [exp] 1031 / 0 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034342 [exp] 1021 / 0 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014244 [exp] 211 / 6e-60 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 203 / 9e-57 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013894 [exp] 197 / 2e-53 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 196 / 2e-53 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 193 / 6e-52 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 191 / 2e-51 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 188 / 3e-50 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10007468 [exp] 181 / 3e-48 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G075700.1 pacid=42813869 polypeptide=Potri.017G075700.1.p locus=Potri.017G075700 ID=Potri.017G075700.1.v4.1 annot-version=v4.1 ATGTCTCCCCTCGCGTTACCTGCTACTTCCATGCAAGTACTAGATCCCCTCCCATCTTCCAACATCTTCCTCCCACTTTTACCCCTAATCAAGATCCATA TTTACACCACCATCTCAAGAAAACCCAGAAGAAGAGCCCGCTCTCTCCTCCTGTATGCAGCCAGAAAAGATATCTGGACAAGAAACACAACGACAGTACC TTACCGTAGAAAACAAAGACAAGAACCGGTTTATTTAGACCACAGTGTGGATATGACCGAGCTATTACTCTCAATTAGCCAAACCCAAAACGAGCTACAA CTATACTCTTTATTATCGCCTTATAAAGACAGGCAACTCTCAATTCGATTCATGGTTTCAGTTATCTCTCGCGAATCTGACTGGCAAAGATCCCTTGCCC TTCTTGATTGGATTAATGATATCGCACGGTATTCCCCATCTGTGTTTGCATACAATGTTGTTCTGCGTAATGTTTTAAGGGCTAAGCAATGGGACCATGC CCATGGCCTGTTTGACGAAATGCGTAACCGAGCTCTTGCACCGGATAGATATACGTATTCCACTTTGATAACCCATTTTGGGAAAGCGGGCATGTTTGAT GCTTCCCTATTTTGGCTTCAACAAATGGAACAAGACCGTGTTTCGGGTGATCTTGTTTTGTATAGTAATTTGATTGAGCTTTCAAGGAAGTTGTGTGATT ATTCTAAGGCTATTTCGATATTTATGAGGCTGAAAAGGAGTGGGATTATGCCGGATTTAGTTGCATATAATTCGATGATTAATGTATTCGGAAAAGCTAA GTTGTTTAGAGAGGCAAAGTTGTTGATGAAGGAGATGAGGGAAGTGGGGGTTATGCCTGATACAGTTAGTTATTCGACGCTGTTGAGTGTTTATGTTGAG AATGAGAAGTTTGTTGAGGCCTTGTCTGTTTTTGCAGAGATGAATGAGGCCAAGTGCCCGCTTGATCTCACGACGTGTAATGTCATGATTGATGTTTATG GGCAGCTTGATATGGCTAAGGAAGCGGATAGGTTGTTTTGGAGCATGAGGAAGATGGGAATTGAACCAAATGTTGTTAGTTATAATACCCTCTTGAGAGT TTATGGAGAGACCGAGCTTTTTGGTGAAGCTATTCATTTATTTAGGTTGATGCAGAAGAAGGATATTGAGCAGAATGTTGTCACTTATAATACTATGATT AAGGTTTATGGGAAATCACTTGAGCATGAAAAGGCCACAAATCTTATGCAGGAAATGCAGAATAGAGGAATTGAACCAAATGCCATTACATACTCAACAA TCATTTCTATTTGGGGTAAGGCAGGGAAATTGGATAGGGCAGCAATGTTGTTTCAAAAGCTGAGAAGTTCAGGGGTTGAGATCGATCAAGTCCTTTATCA GACAATGATTGTGGCTTATGAACGTTCAGGTTTGGTTGCTCATGCTAAGCGACTGCTTCACGAGCTCAAACACCCAGACAGTATCCCTAGGGAAACTGCT ATTAAAATTCTTGCCAGAGCTGGTAGAATAGAAGAGGCCACATGGGTTTTTCGTCAGGCTTTTGATGCTGGGGAGGTGAAGGATATATCTGTGTTTGGAT GCATGGTCGATCTTTTTTCAAGGAACAGAAAACCTGCAAATGTGATTGAGGTGTTTGAAAAGATGAGGGGAGCTGGATACTTTCCTGATTCTAATGTGAT TGCTCTTGTTCTGAATGCTTACGGGAAGTTGCATGAATTTGAGAAGGCGGATGCTTTATATAAAGAAATGCAGGAAGAAGAATGTGTTTTTCCAGATGAA GTTCATTTCCAGATGCTGAGTTTATACGGTGCAAGAAAAGACTTTATGATGATTGAGGCCTTGTTCGAGAGGCTGGATTCTGATCCTAACATTAACAAGA AAGAGTTGCATCTTGTTGTTGCCAGCATTTATGAAAGAAAAAATAGATTAAATGATGCATCACGGATCATGAACAGGATGAGTAAAGGAGGCGTTTTGAG ATCACCAGCATAG
AA sequence Show only first row Show all	>Potri.017G075700.1 pacid=42813869 polypeptide=Potri.017G075700.1.p locus=Potri.017G075700 ID=Potri.017G075700.1.v4.1 annot-version=v4.1 MSPLALPATSMQVLDPLPSSNIFLPLLPLIKIHIYTTISRKPRRRARSLLLYAARKDIWTRNTTTVPYRRKQRQEPVYLDHSVDMTELLLSISQTQNELQ LYSLLSPYKDRQLSIRFMVSVISRESDWQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFD ASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVE NEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMI KVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETA IKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVFPDE VHFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASIYERKNRLNDASRIMNRMSKGGVLRSPA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	1.00	0.9891
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	1.41	0.9825
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	2.44	0.9766
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	2.64	0.9701
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	3.16	0.9727
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	3.74	0.9606
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	4.24	0.9672
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.016G074800 [exp]	5.47	0.9592
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	5.65	0.9701
AT3G22690			unknown protein		Potri.006G245300 [exp]	6.32	0.9514

Compare expression of checked genes

Potri.017G075700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.