Plant FIBer expression Database

Potri.017G075800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39970 837 / 0 catalytics (.1)
AT1G74790 822 / 0 catalytics (.1)
AT5G62630 754 / 0 HIPL2 hipl2 protein precursor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G067200
[exp]
905 / 0 AT1G74790 915 / 0.0 catalytics (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036662
[exp]
876 / 0 AT1G74790 923 / 0.0 catalytics (.1)
Lus10033116
[exp]
860 / 0 AT1G74790 926 / 0.0 catalytics (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07995 GSDH Glucose / Sorbosone dehydrogenase
Representative CDS sequence
>Potri.017G075800.1 pacid=42813579 polypeptide=Potri.017G075800.1.p locus=Potri.017G075800 ID=Potri.017G075800.1.v4.1 annot-version=v4.1
ATGGATGGTATTCCTTCAATCATCTTCTTGTTCTGTAACATGCTGCTTCTTACTCGTTATGGTTCTTCATATCCGTTGTGCACTGATTTAAGGTCTCCCT
TTATCCCGAAATCACCTCTCGCTTTCTGTCAATACAGTGGAAGCGTATGCTGTAACTCCACTGAAGATGTAGAGTTGCACAAACAGTTTAAATCATTGAA
TGTTTCTGATTATGGCTGTGCTTCTCTTCTGAAATCAACACTCTGCTCAAGATGTGATCCGTTTTCAGCAGAGCTTTATAGAATTGTATCGGCTCCTCGA
CTAGTTCCTGTCCTTTGCAATTCCACAGTTTCAGTAAACTCATCCCAGTCCCAACTTGCTGCTACAGACTTTTGCTCAAGAGTTTGGGATGAATGCCATA
ATTTATCCATATCAAATTCTCCTTTCGCAATAGACAAAGGTGGATCTGTGGTTAATTCTTCTTCCAAACTGACGGAATTATGGGAGTCAAAGGGTGCTTT
CTGTAATGAGTTTGGAGGAGCTTCTGATGATGGTTCGGTATGTTTCGATGGTGGACCAGTTTCACTAAACAGTTCTGAAAGTCCAAGTCTCCCTAGTGGT
ATCTGCCTTGAGAAGATTGCGAACGGATCCTACCTTAATATGGTAGCTCATCCTGATGGTTCAAACCGTGTCTTCTTAGCAAACCAACCGGGTAAGATTT
GGTTGGCTACGGTTCCTGCTGAGGGATCAGGAGAAACTCTAGGGCTTGATGAATCAAACCCTTTTCTTGATTTGACCGACGAAGTATATTATGATACTGC
ATTGGGGATGATGGGAATAGCTTTTCATCCAAATTTTCATCAAAATGGACGTTTCTTTGCTTCTTTTAACTGTGATAAGGTAAAATGGCCGGAATGTTCA
GGAAGATGTTCATGTAACTCTGATATGGGATGTGATCCTTCAAAGCTTCCCTCTGAGAATGGAGCGCAACCTTGCCAGTATCACAGCATCATAGCAGAGT
TTAGTGCAAATGGTACCTCATCGCAACCTTCCTTGGCAACAAGTGTGCAACCACAGGAAGTCAGAAGAATATTTACCATGGGTTTGCCATTTACTGCCCA
TCATGGTGGTCAGATACTTTTTGGACCTGAAGATGGATATTTGTACTTTATGATGGGAGATGGTGGAAGTATTGGCGATCCTTACAATTTTTCACAAAAC
AAGAAATCATTGCTTGGAAAAATTATGAGGCTGGACATAGACAACATTCCAAGTGGCCAAAAGATCACTGACCTAGGCCTGTGGGGAAATTACTCTGTCC
CTGGAGATAATGCATTTTCTGAAGACAAGGGATTGGAGCCTGAAATCTGGGCACTAGGATTAAGAAATCCTTGGCGATGCTCTTTTGATGCAGAGAGGCC
TTCCTACTTTCTCTGTGCAGATGTTGGCCAGGATCAATATGAAGAGGTAGATCTCATCACCAAGGGTGGTAACTACGGATGGCGTGTTTATGAGGGTCAA
TTTCTGTACCATCCCCCAACTGCTCCAGGGGGGAATACATCTGTGAGTTCCATAAATCCAATTTTTCCTGTAATGGGATACAACCACTCAGAAGTAAACA
ATGAAGAAGGATCTGCATCAATTACAGGAGGCTATTTCTATCGATCGATGACTGATCCATGCATGTATGGAAGATACCTTTTTTCAGATTTGTACGCTGG
AGCAATATGGGCTGGAACAGAGAACCCGAAAGATAGCGGGAACTTCACAAGCACTAAGCTTCCTGTTAGTTGTGCCCATGACACTCCTATCCCATGCACG
ACGGCAGCAGGGAGTTCTTTCCCTTCACTGGGATTCATATTCTCTTTTGGTCAGGATAACAGGAAAGACACGTTTATTTTAGCCAGCAGTGGTGTATACA
GAATAGCTCGTCCTAGCAGATGCAGTTACGTTTGCTCAATGGAGAATGTCACAGCTCCTGTTCCCTCCTCCCCTTCCCCTTCCCCTTCTGCCGGAAAACG
TCTCAGCAAGCCACTAACAGTGCTGCTAAATATTCTTTTCTCCGCTTCGTTGTTGATATTATCGAACTTTCAACATATATAA
AA sequence
>Potri.017G075800.1 pacid=42813579 polypeptide=Potri.017G075800.1.p locus=Potri.017G075800 ID=Potri.017G075800.1.v4.1 annot-version=v4.1
MDGIPSIIFLFCNMLLLTRYGSSYPLCTDLRSPFIPKSPLAFCQYSGSVCCNSTEDVELHKQFKSLNVSDYGCASLLKSTLCSRCDPFSAELYRIVSAPR
LVPVLCNSTVSVNSSQSQLAATDFCSRVWDECHNLSISNSPFAIDKGGSVVNSSSKLTELWESKGAFCNEFGGASDDGSVCFDGGPVSLNSSESPSLPSG
ICLEKIANGSYLNMVAHPDGSNRVFLANQPGKIWLATVPAEGSGETLGLDESNPFLDLTDEVYYDTALGMMGIAFHPNFHQNGRFFASFNCDKVKWPECS
GRCSCNSDMGCDPSKLPSENGAQPCQYHSIIAEFSANGTSSQPSLATSVQPQEVRRIFTMGLPFTAHHGGQILFGPEDGYLYFMMGDGGSIGDPYNFSQN
KKSLLGKIMRLDIDNIPSGQKITDLGLWGNYSVPGDNAFSEDKGLEPEIWALGLRNPWRCSFDAERPSYFLCADVGQDQYEEVDLITKGGNYGWRVYEGQ
FLYHPPTAPGGNTSVSSINPIFPVMGYNHSEVNNEEGSASITGGYFYRSMTDPCMYGRYLFSDLYAGAIWAGTENPKDSGNFTSTKLPVSCAHDTPIPCT
TAAGSSFPSLGFIFSFGQDNRKDTFILASSGVYRIARPSRCSYVCSMENVTAPVPSSPSPSPSAGKRLSKPLTVLLNILFSASLLILSNFQHI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39970 catalytics (.1) Potri.017G075800
[exp]
0 1
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.019G080500
[exp]
1.00 0.9810 CYP716B4
AT1G14920 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMON... Potri.016G027800
[exp]
2.82 0.9776
AT3G59710 NAD(P)-binding Rossmann-fold s... Potri.013G127700
[exp]
3.74 0.9697
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.006G058200
[exp]
5.47 0.9792 Pt-CYP93.2
AT1G08930 ERD6 EARLY RESPONSE TO DEHYDRATION ... Potri.013G027700
[exp]
5.74 0.9706
AT5G10190 Major facilitator superfamily ... Potri.007G091700
[exp]
6.70 0.9564
AT1G61050 alpha 1,4-glycosyltransferase ... Potri.004G039300
[exp]
6.92 0.9752
AT2G23770 protein kinase family protein ... Potri.009G010300
[exp]
7.41 0.9753
AT3G02100 UDP-Glycosyltransferase superf... Potri.004G119700
[exp]
7.74 0.9658
AT5G50300 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANI... Potri.015G090000
[exp]
9.48 0.9677

Potri.017G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.