Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27100 431 / 2e-147 Actin cross-linking protein (.1) AT3G28630 348 / 1e-117 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 313 / 3e-104 Protein of unknown function (DUF569) (.1) AT1G59710 311 / 2e-103 Protein of unknown function (DUF569) (.1) AT1G69900 301 / 3e-98 Actin cross-linking protein (.1) AT1G69890 269 / 2e-87 Protein of unknown function (DUF569) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130200 [exp] 711 / 0 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.010G035100 [exp] 491 / 5e-171 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 473 / 7e-164 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015346 [exp] 337 / 7e-113 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10001124 [exp] 335 / 5e-112 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10030804 [exp] 325 / 3e-109 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 307 / 6e-102 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10013281 [exp] 227 / 9e-72 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10037230 [exp] 182 / 2e-52 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 178 / 6e-52 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036693 [exp] 167 / 4e-49 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10036692 [exp] 49 / 1e-07 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF04601 [poplar] [flax] DUF569 Domain of unknown function (DUF569) CL0066 [poplar] [flax] Trefoil PF06268 [poplar] [flax] Fascin Fascin domain
Representative CDS sequence Show only first row Show all	>Potri.017G075900.1 pacid=42812869 polypeptide=Potri.017G075900.1.p locus=Potri.017G075900 ID=Potri.017G075900.1.v4.1 annot-version=v4.1 ATGGAATTCTTCAACCAAGCCAAAGCAGTGAGACTCAAGAGTCACCACGACAAGTACCTTGTTGCAGATGAGGATGGAGAAACTGTTCGGCAGAGCCGCG ACGGATCATCACGAAGAGCCCGTTGGACAGTAGAGTTGATTCAAGGCAATAACCATCATATCCGACTAAAAAGTTGTCGTGGAAAGTATCTTACAGCCTC GGAGGAGCCATTCTTGCTAGGCATGGCAGGGAAGAAAGTGGTACAAGACATGCCAGTATCTGTAAAGGATACTGCGATTGATTGGGAACCAAGAACTGAA GGGTTTCTTGTCAAGTTAAAGACAAGTAGAGGCAAGTTCTTGCTTGCTAACGGACGCATGCCACCATGGAGAAACTCGGTCACACACGACACCCCACGCA GGACTGTAACACACGATTGGGTACTTTGGGAAGTGGATGTGATGGACATTCTCGAAACTATATTGCCTGCTTCGCAGCTCTCCGGTGCTTCACCGCTTTC CGATATAGGCTCCCAGTACGTCGTTAGTTTTTCTAGCCGCAGACTTTCTATTGCAAGAGAGAGTGCTATGGATATTTTTGAAAAAGCAACCTCTGTTCGT CTTCGGAGTCACCATGACAAGTATCTTACAGCAGATGATGATGAAGAAACCGTTAGCCAAGAGCGCAATGGGACAGTGAAGAATGCGAAATGGACTGTGG AGATTGTCGGCCATAGCAATGTTATACGTTTGAAAAGTTGTTTTGGCAGATACTTGACAGCCAGTAACTTGCCGTTCTTTCTAGGAATGACAGGCAAGAA AGTGCTGCAAACTTTGCCTGAACGATTGGATTCTTCTGTGGAATGGGAGCCCATCAGGGAAGGCGTCCAGGTTAGGCTCAGGACGCGTTACGGGCAATAT TTACGCGCAAATGGAGGCGTGCCACCTTGGAGAAATCATATAACACATGACATTCCTCATAGAACTTCGACGCAGGATTGGATTCTATGGGATGTGGATG TTGTACAGATAAGAGTCCCAGATCCTGCAACTCCGCCAGTACAGCAACAACAACAACCACCTGGTGAACAAAGTCAAACGGCACCGAATTCCGAGGCTAG TTCACCAACGACGTCCCCCAGATTTTTGTTCGTGCAGTCCGATGATTCTTTCGAAGGTTCGTCGGTGAAAAATGAAGGCAGGGCCATACATTACCGAGTG GCCATTAATGTAGATGGTGATGTTGACGAAAATGAAGAACTTTCCTTCACATTTAAGGGAAGCATGGTGGAGGAATTGAAGAATAAGTTGGAAGAAGAGA CAGGGCTCGTTGATATCCAAGTTTGCTCCAGGAATCCATTGAATGGGAAGATCTATCCCCTTCGCTTACATCTTCCACCAAACAACACAGAAATGCATGT TGTTGTCGTTCCCTCTCCAGGGAGAGATTAG
AA sequence Show only first row Show all	>Potri.017G075900.1 pacid=42812869 polypeptide=Potri.017G075900.1.p locus=Potri.017G075900 ID=Potri.017G075900.1.v4.1 annot-version=v4.1 MEFFNQAKAVRLKSHHDKYLVADEDGETVRQSRDGSSRRARWTVELIQGNNHHIRLKSCRGKYLTASEEPFLLGMAGKKVVQDMPVSVKDTAIDWEPRTE GFLVKLKTSRGKFLLANGRMPPWRNSVTHDTPRRTVTHDWVLWEVDVMDILETILPASQLSGASPLSDIGSQYVVSFSSRRLSIARESAMDIFEKATSVR LRSHHDKYLTADDDEETVSQERNGTVKNAKWTVEIVGHSNVIRLKSCFGRYLTASNLPFFLGMTGKKVLQTLPERLDSSVEWEPIREGVQVRLRTRYGQY LRANGGVPPWRNHITHDIPHRTSTQDWILWDVDVVQIRVPDPATPPVQQQQQPPGEQSQTAPNSEASSPTTSPRFLFVQSDDSFEGSSVKNEGRAIHYRV AINVDGDVDENEELSFTFKGSMVEELKNKLEEETGLVDIQVCSRNPLNGKIYPLRLHLPPNNTEMHVVVVPSPGRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27100			Actin cross-linking protein (....		Potri.017G075900 [exp]	0	1
AT4G14746			unknown protein		Potri.013G039300 [exp]	2.64	0.9960	Pt-MTN26.2
					Potri.014G012900 [exp]	2.82	0.9959
					Potri.010G218400 [exp]	6.48	0.9925
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223700 [exp]	8.48	0.9961
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.005G098000 [exp]	8.48	0.9961	NAC077
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.002G056700 [exp]	9.21	0.9961
AT5G05840			Protein of unknown function (D...		Potri.010G195200 [exp]	9.48	0.9906
					Potri.010G218500 [exp]	10.95	0.9964
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.001G224000 [exp]	12.36	0.9963
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	14.00	0.9935

Compare expression of checked genes

Potri.017G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.