Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61010 1242 / 0 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 297 / 2e-91 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT5G23880 148 / 3e-37 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT2G45700 48 / 2e-05 sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076132 [exp] 1359 / 0 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 1182 / 0 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 310 / 1e-95 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.001G231800 [exp] 147 / 8e-37 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015460 [exp] 947 / 0 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10001372 [exp] 422 / 1e-144 AT1G61010 424 / 1e-145 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10037338 [exp] 315 / 7e-100 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 314 / 6e-99 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035061 [exp] 125 / 1e-29 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10021705 [exp] 124 / 4e-29 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10001371 [exp] 0 / 1 AT1G61010 206 / 5e-68 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [poplar] [flax] P-loop_NTPase PF10996 [poplar] [flax] Beta-Casp Beta-Casp domain CL0023 [poplar] [flax] PF11718 [poplar] [flax] CPSF73-100_C Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
Representative CDS sequence Show only first row Show all	>Potri.017G076000.2 pacid=42814506 polypeptide=Potri.017G076000.2.p locus=Potri.017G076000 ID=Potri.017G076000.2.v4.1 annot-version=v4.1 ATGGCATCAACAGGGCAATCACAGTCACTAAAAAGAAGGGATGCACCAGTAACAAGAGAAGGAGGGGATCAGCTAACTCTAACCCCTTTAGGTGCTGGAA ATGAAGTGGGTCGATCCTGTGTTTACATGTCATTTAAAGGCAAGACTGTATTGTTTGATTGTGGAATTCATCCGGCTTATTCGGGTATGGCTGCTTTACC TTACTTCGATGAGATTGACCCTTCCACTATTGATGTACTTCTCGTTACACACTTTCACTTGGATCATGCTGCATCCTTGCCTTATTTTCTTGAGAAGACC ACATTCAGAGGTCGAGTTTTCATGACTCATGCGACAAAGGCTATCTACAAGTTGCTTTTGACTGATTATGTAAAAGTGAGCAAAGTTTCAGTGGAAGATA TGTTGTTTGATGAGAAAGACATAAACCGCTCAATGGATAAAATCGAGGTTATTGACTTCCATCAGACTCTGGATGTTAATGGCATTAAATTTTGGTGCTA CACTGCTGGCCATGTCCTTGGTGCTGCCATGTTCATGGTAGATATCGCTGGTGTTCGAGTGCTGTATACTGGAGACTATTCACGTGAAGAAGATCGGCAT CTTCGTGCTGCTGAGATGCCACAATTCTCTCCAGACATATGCATAATTGAATCTACCTATGGTGTCCAACTCCATCAACCTCGACACCTTCGGGAGAAGC GCTTCACTGATGTTATCCACTCCACCATCTCTCTAGGTGGTCGTGTTCTAATTCCAGCATTTGCTCTTGGCCGAGCTCAAGAACTCCTTTTGATCCTTGA TGAGTATTGGGCAAACCATCCCGAGCTTCATAACATTCCCATATATTATGCTTCTCCCCTTGCAAAAAAGTGTATGACTGTTTACCAGACATACATCCTT TCTATGAATGAAAGGATCCGCAATCAGTTTGCGAATTCAAACCCCTTCAAATTCAAGCATATATCACCATTAAATAGCATTGAAGATTTTAGTGATGTAG GGCCATCTGTGGTTATGGCAAGTCCTGGAGGACTGCAGAGCGGGTTGTCAAGGCAGTTGTTTGATATGTGGTGCTCTGATAAGAAAAATGCTTGTGTTTT ACCTGGATATGTTGTTGAAGGGACCCTAGCTAAGACAATCATTAATGAACCAAAGGAGGTACAGCTCATGAATGGACTAACTGCACCACTCAACATGCAG GTCCATTACATCTCATTCTCTGCACATGCAGATTATGCTCAGACAAGTACATTTTTGAAAGAGCTCATGCCTCCTAACATTATTCTTGTTCATGGAGAAG CCAATGAAATGGGAAGGCTCAAACAGAAACTTATCACAGAGTTTGCTGATGGCAATACCAAGATAATCACCCCAAAGAATTGCCAGTCTGTTGAGATGTA TTTCAACTCTGAAAAAATGGCAAAAACCATTGGAAAGCTGGCTGAAAGGACCCCGGATGTTGGTGAAACTGTCAGTGGTATACTGGTGAAGAAGGGCTTC ACTTATCAAATCATGGCACCTGGAGATCTCCATGTCTTCTCACAACTATCAACTGGAAATATTACTCAGAGGATTACCATTCCTTTTTCTGGTGCATTTG GTGTGATAAAGCACAGGCTTGAGCAGATTTATGAGAGTGTGGAGTCTGGAACTGACGAGGAGTCTGGGTTTCCAACATTGCAAGTGCATGAGCTGGTAAC AGTGAAACAAGAGTCTGATAGACATATTTCACTTCATTGGACTGCTGACCCCATAAGTGATATGGTGTCTGATTCAATTGTAGCTTTGGTTTTGAACATC AGCCGGGAGGTTCCTAAGGTAATTGTCGAGTCAGAGGACATAAAATCTGAGGAAGAAAATGAGAAAAAAGCAGAGAAAGTGATTTATGCCCTCCTTGTTT CACTTTTTGGAGATGTGAAACTTGGAGAGAACGGGAAGCTGGTCTTACGTGTTGATGGGAATGTGGCAGAGCTTGACAAACAGAGTGGGGATGTTGAGAG TGAGAATGAAGGTCTCAAGGAACGAGTTAGGACAGCATTTAGGCGAATACGAAGTGCTGTGAGGCCAATCCCGCTCCCGCTCCCTGCACCTGCATCTTAG
AA sequence Show only first row Show all	>Potri.017G076000.2 pacid=42814506 polypeptide=Potri.017G076000.2.p locus=Potri.017G076000 ID=Potri.017G076000.2.v4.1 annot-version=v4.1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKT TFRGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTLDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH LRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYIL SMNERIRNQFANSNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVLPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQ VHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKLAERTPDVGETVSGILVKKGF TYQIMAPGDLHVFSQLSTGNITQRITIPFSGAFGVIKHRLEQIYESVESGTDEESGFPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNI SREVPKVIVESEDIKSEEENEKKAEKVIYALLVSLFGDVKLGENGKLVLRVDGNVAELDKQSGDVESENEGLKERVRTAFRRIRSAVRPIPLPLPAPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076000 [exp]	0	1
AT5G24650			Mitochondrial import inner mem...		Potri.012G004600 [exp]	2.44	0.8281
AT5G10920			L-Aspartase-like family protei...		Potri.002G106200 [exp]	8.94	0.8249
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076132 [exp]	10.09	0.7745
AT3G63390			unknown protein		Potri.002G047400 [exp]	12.64	0.8359
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	17.00	0.8378
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	25.78	0.8229
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.011G118000 [exp]	28.77	0.7900
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	34.72	0.8111
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	39.30	0.7512
AT3G53580			diaminopimelate epimerase fami...		Potri.006G102700 [exp]	40.32	0.8214

Compare expression of checked genes

Potri.017G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.