Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61010 1093 / 0 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 248 / 1e-73 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT5G23880 133 / 2e-32 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076132 [exp] 1188 / 0 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076000 [exp] 1177 / 0 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 257 / 9e-77 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.001G231800 [exp] 133 / 3e-32 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015460 [exp] 940 / 0 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10001372 [exp] 422 / 1e-145 AT1G61010 424 / 1e-145 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10035763 [exp] 261 / 2e-79 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 258 / 8e-79 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10021705 [exp] 116 / 7e-27 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035061 [exp] 116 / 1e-26 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10001371 [exp] 0 / 1 AT1G61010 206 / 5e-68 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [poplar] [flax] P-loop_NTPase PF10996 [poplar] [flax] Beta-Casp Beta-Casp domain CL0023 [poplar] [flax] PF11718 [poplar] [flax] CPSF73-100_C Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term CL0381 [poplar] [flax] Metallo-HOrase PF16661 [poplar] [flax] Lactamase_B_6 Metallo-beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.017G076300.1 pacid=42814285 polypeptide=Potri.017G076300.1.p locus=Potri.017G076300 ID=Potri.017G076300.1.v4.1 annot-version=v4.1 ATGCTTTCTGCTTGCAGCTTTCACTTGGATCATGCTGCATCCCTACCTTATTTTCTTGAGAAGACCACATTCAGAGGTCGAGTTTTCATGACTCATGCGA CAAAGGCTATCTTCAAGTTGCTTTTGACTAATTATGTAAAAGTGAGCAAAGTTTCAGTGGAAGATATGCTGTTTGATGAGAAAGACATAAACCGCTCAAT GGATAAAATCGAGGTTATTGACTTCCATCAGACTGTGGATGTTAATGGCATTAAATTTTGGTGCTACACTGCTGGCCATGTCCTTGGTGCTGCCATGTTC ATGGTAGATATTGCCGGTGTTCGAGTGCTCTATACTGGAGACTATTCACGTGAAGAAGATCGGCATCTTTGTGCTGCTGAGATGCCACAATTCTCTCCTG ACATATGCATAATTGAATCTACCTATGGTGTCCAACTCCATCAACCTCGACACCTTAGGGAGAAGCGCTTCACTGATGTTATCCATTCCACCATCTCTCT AGGCGGTCGTGTTCTAATTCCAGCATTTGCCCTCGGCCGAGCTCAAGAACTCCTTTTGATCCTTGATGAGTATTGGTCAAACCATCCTGAGCTTCATAAC ATTCCCATATATTATGCTTCTCCCCTTGCGAAAAAGTGTATGACTGTTTACCAGACATACATCCTTTCTATGAATGAAAGGATCCGCAATCAGTTTGCGA ATTCAAACCCCTTCAAATTCAAGCATATATCACCGTTGAATAGCATTGAAGATTTTACTGATGTAGGGCCATCTGTGGTTATGGCAAGTCCTAGTGGACT TCAGAGCGGTTTGTCAAGGCAGTTGTTTGATATGTGGTGCTCTGATAAGAAAAATGCTTGTGTTATACCTGGATATGTTGTTGAAGGGACCCTAGCTAAG ACAATCATTAATGAACCAAAGGAGGTACAGCTCATGAATGGACTGACTGCACCACTCAACATGCAGGTCCATTACATCTCGTTCTCTGCCCATGCAGATT ATGCTCAGACAAGTACATTTTTGAAAGAGCTCATGCCTCCTAACATTATTCTAGTTCATGGAGAAGCCAATGAAATGGGAAGGCTCAAACAGAAACTTAT CACAGAGTTTACTGACGGCAACACCAAGATAATCACCCCAAAGAATTGTCAGTCTGTTGAGATATATTTCAACTCTGAAAAAATGGCAAAAACCATTGGA AAGCTGGCTGAAAGGACCCCGAATGTTGGTGAAACTGTCAGTGGTATACTGGTGAAGAAGGGCTTCACTTATCAAATCATGGCACCTGGAGATCTCCATG TCTTCTTACAACTATCAACTGGAAATATTACTCAGAGGATTACCATTCCTTTTTCTGGTGCATTTGGTGTGATAAAGCACAGGCTTGAGCAGATTTATGA GAGTGTGGAGTCTGGAACTGATGAGGAGGAGTCTGGGTCTCCAACATTGCAAGTGCATGAGCTGGTAACAGTGAAACAAGAATCTGATAGACATATTTCA CTTCATTGGACTGCTGACCCCATAAGTGATATGGTATCTGATTCAATTGTAGCTTTGGTTTTGAACATCAGCCGGGAGGTGCCTAAGGTAATTGTCGAGT CAGAGGACATAAAATCCAAGGAAGAAAAGGAGAAAAAAGCAGAGAAAGTGATTTATGCCCTCCTTGTTTCACTCTTTGGAGATGTGAAACTTGGAGGGAA CGGGAAGCTGGTCATACGTGTCGATGGGAATGTGGCAGAGCTTGACAAACAGAGTGGGGATGTTGAGAGTGAGCATGAAGGTCTCAAGGAACGAGTTAGG ACAGCATTTAGACGAATTCAAAGTGCTGTGAGGCCAATCCCACTCCCTGCATCTTAG
AA sequence Show only first row Show all	>Potri.017G076300.1 pacid=42814285 polypeptide=Potri.017G076300.1.p locus=Potri.017G076300 ID=Potri.017G076300.1.v4.1 annot-version=v4.1 MLSACSFHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKLLLTNYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMF MVDIAGVRVLYTGDYSREEDRHLCAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHN IPIYYASPLAKKCMTVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKNACVIPGYVVEGTLAK TIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEIYFNSEKMAKTIG KLAERTPNVGETVSGILVKKGFTYQIMAPGDLHVFLQLSTGNITQRITIPFSGAFGVIKHRLEQIYESVESGTDEEESGSPTLQVHELVTVKQESDRHIS LHWTADPISDMVSDSIVALVLNISREVPKVIVESEDIKSKEEKEKKAEKVIYALLVSLFGDVKLGGNGKLVIRVDGNVAELDKQSGDVESEHEGLKERVR TAFRRIQSAVRPIPLPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076300 [exp]	0	1
AT1G25145		AtLpxC4	lipid X C4, UDP-3-O-acyl N-ace...		Potri.010G106400 [exp]	9.48	0.8410
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	18.54	0.8222
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.013G161800 [exp]	22.58	0.8120	Pt-KAO2.1,CYP88A8
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048200 [exp]	24.00	0.8015
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G218000 [exp]	24.04	0.7909
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.006G248800 [exp]	24.67	0.7804
AT3G07440			unknown protein		Potri.007G083100 [exp]	26.32	0.8019
					Potri.001G443025 [exp]	32.49	0.7693
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G072766 [exp]	32.93	0.7790
AT1G04710		KAT1, PKT4	3-KETO-ACYL-COA THIOLASE 1, pe...		Potri.013G097500 [exp]	37.64	0.8005	PED1.2

Compare expression of checked genes

Potri.017G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.