Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15070 1744 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT3G01310 1743 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129900 [exp] 1962 / 0 AT5G15070 1761 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015343 [exp] 1756 / 0 AT3G01310 1726 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10008307 [exp] 1689 / 0 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10032191 [exp] 1492 / 0 AT5G15070 1465 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10005263 [exp] 1391 / 0 AT5G15070 1377 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00328 [poplar] [flax] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Potri.017G076400.9 pacid=42814154 polypeptide=Potri.017G076400.9.p locus=Potri.017G076400 ID=Potri.017G076400.9.v4.1 annot-version=v4.1 ATGGAAAAGAAGGTGAAATGCGGCTCTGAGGTGTTATCAGCTCCAATGGGACAGATTCTTGATAGATTACAAGCATTTGGTGAATTCGAAGTTATGTATT TCGGTGATAAAGTGATTCTTGAGGATCCAATTGAGAGCTGGCCAATATGTGATTGCTTGATTGCTTTCTATTCCACTGGTTATCCCCTTGAAAAGGCTGA GGCATATGCCACTTTAAGGAAGCCTTTTCTTGTGAATGAATTGGTGCCACAACATCTTCTTCATGACCGGCGGAAGGTGTATGAGCGCGCTGAAATGTTT GGAATTCCTGTCCCGAGATATGCCCTTGTTAATAGGGAGTTTCCATTTCAAGAGTTGGATTATTTTATTGAAGAAGAAGATTTTGTTGAGGTCCATGGAA GTCGTTTTTGGAAACCCTTTGTAGAGAAGCCTGTTGATGGCGATGACCACAGCATCATGATATATTATCCCAGTGCAGCAGGTGGAGGTATGAAGGAATT GTTTAGGAAGGTTGGTAATCGGTCAAGTGATTTCCATCAAGATGTTAGAAGAGTGAGGCGTGAAGGCTCTTACATATATGAAGAATTTATGCCAACTGGA GGAACAGATGTGAAGGTGTATACTGTTGGTCCTGAATATGCACACGCTGAGGCAAGGAAATCTCCTGTTGTTGATGGTGTTGTCATGCGGAATCCTGATG GAAAAGAAGTAAGGTATCCAGTGTTACTGACACCTAACGAGAAGCAAATGGCAAGAGATGTTTGCATTGCATTTAGGCAGGCGGTTTGTGGGTTTGATCT CCTGCGTTGTGAAGGACGATCATATGTTTGTGATGTAAATGGATGGAGTTTTGTGAAAAATTCCTACAAATATTATGATGATTCTGCTTGTGTATTGAGA AAGATGCTTTTGGATGCGAAAGCTCCTCATCTTTCATCAGCAATTCCCCCCACTTTACCATGGAAAGTCAATGAACCAGTCCAGCCTTCTGAGGGATTAA CTCGTCAGGGAAGTGGGATTATTGGTAGATTTGGGCAGTCTGAGGAGCTACGCTGTGTGATTGCCATTATTCGTCATGGTGATAGAACTCCCAAACAGAA GGTGAAGTTGAAGGTCACAGAGGAAAAGCTGCTGAATTTGATGTTAAAGTACAATGGGGGACGACCCAGATCTGAGACAAAACTTAAAAGTGCTGTTCAA TTACAAGATCTGTTAGATGCAACTCGAATACTTGTACCTCGTACAAGACCTGGTCGAGAAAGTGATAGTGAGGCAGAAGACTTTGAGCATGCTGAAAAGC TACGACAAGTTAAAGCAGTTCTTGAGGAGGGGGGGCATTTCTCTGGTATTTATAGGAAGGTCCAGCTAAAACCTCTAAAGTGGGTTAAAGTTCCAAAAAG TAATGGTGAAGGTGAGGAAGAACGACCCGTTGAAGCTCTCATGGTCCTTAAATATGGAGGTGTTCTTACCCATGCTGGCAGAAAGCAGGCAGAAGAGCTG GGTAGATATTTTCGAAATAATATGTATCCAGGTGAAGGCACAGGGCTGCTTCGTCTTCATAGCACATATCGTCATGACCTTAAAATTTACAGCTCTGACG AAGGTCGTGTACAGATGTCCGCAGCAGCATTTGCAAAGGGCCTCCTCGATCTGGAAGGACAGCTAACACCAATTCTGGTTTCCCTTGTTAGTAAGGATTC CTCCATGCTGGATGGGCTTGACAATGCCAGCAGTGAGATGGAAGAAGCCAAGGCTAGGTTGAATGAGATTATAACATCTGCTGCAAAGATAGTTCATAGC AATGGATCCTCTGAGTGTCCTTGGATGACTGATGGAGCTGGACTGCCTTCAAATGCTTCTGAACTTCTCCCTAAACTGGTAACATTGACCAAGAAGGTGA CAGAACAAGTGAGACTACTTGCCAAGGATGAAGATGAAGAACTTACAGAGACAAGCTCATATGAAGTAATTCCACCATATGACCAAGCAAAGGCTCTAGG TAAAATAAATATTGATATAGATCGTATTGCTGCTGGATTACCCTGTGGAAGTGAGGGATTCTTGTTGATGTATGCTCGCTGGAAGAAGCTTGAAAGAGAC TTGTATAATGAACGCAAAGTGCGGTTTGATATAACACAAATTCCTGATGTTTATGACTCTTGCAAATATGATCTGTTACACAATGCTCACCTTAATCTAG AGGGGCTGGATGAACTCTTCAAAGTTTCTCAGCTACTTGCTGATGGTGTCATTCCTAATGAGTATGGAATTAATCCAAAGCAGAGATTGAAGATTGGCTC AAAGATAGCTCGTCGTTTGTTGGGTAAAATATTGATTGATCTTAGGAACACACGTGAGGAAGCCATTAGTGTTGCTGAATTAAAATGTAATGAAGATCAG CAATCAACTTCTAAGAAGTCTGAAAAGGAAGACACAGATTACCAGTTAAAGCTTTCAATTAAGAATGATGACGTGAGAAGAACTAGCACCACTAGTGATA TATCAATGGATCAGGATGATGATGATGATAAAGAGACAAAATACCGTTTGGATCCAAAGTATGCAAATGTAAAGACCCCAGGACGCCATGTGCGTACACG CCTCTATTTTACATCGGAATCACATATACATTCCCTTATGAATGTTCTCCGTTACTGTAACCTGGATGAATCTCTTCAAGGTGAGGATAGCCTTGTTTGC CAGAATGCCTTGGAGCGTTTGTACAAAACCAAGGAGCTTGACTACATGAGCTATATTGTGCTAAGGATGTTTGAGAATACTGAGGTTGCTTTGGAAGACC CAAAAAGGTTCCGCATAGAGATGACTTTCAGCCGTGGGGCAGACTTGTCCCCGTTGGAGAAGAATGACAGTGAGGCTACCTCGTTGCATCAGGAGCACAC TCTTCCAATAATGGGTCCAGAAAGGCTGCAAGAAGTGGGATCCTATCCCACATTAGAGAAAATGGAGATGATGTTTCGTCCTTTTGCCATGCCAGCAGAA GACTTTCCTCCACCGTCCACCCCTGCTGGATTCTCGGGCTACTTCTCAAAAAGTGCAGTACTTGAGCGCCTTGTTAATCTTTGGCCCTTCCATAAGCATG ATAAGCATGCAAGTGCTAATGGAAAGTAG
AA sequence Show only first row Show all	>Potri.017G076400.9 pacid=42814154 polypeptide=Potri.017G076400.9.p locus=Potri.017G076400 ID=Potri.017G076400.9.v4.1 annot-version=v4.1 MEKKVKCGSEVLSAPMGQILDRLQAFGEFEVMYFGDKVILEDPIESWPICDCLIAFYSTGYPLEKAEAYATLRKPFLVNELVPQHLLHDRRKVYERAEMF GIPVPRYALVNREFPFQELDYFIEEEDFVEVHGSRFWKPFVEKPVDGDDHSIMIYYPSAAGGGMKELFRKVGNRSSDFHQDVRRVRREGSYIYEEFMPTG GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMARDVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDSACVLR KMLLDAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIIGRFGQSEELRCVIAIIRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRSETKLKSAVQ LQDLLDATRILVPRTRPGRESDSEAEDFEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKVPKSNGEGEEERPVEALMVLKYGGVLTHAGRKQAEEL GRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEEAKARLNEIITSAAKIVHS NGSSECPWMTDGAGLPSNASELLPKLVTLTKKVTEQVRLLAKDEDEELTETSSYEVIPPYDQAKALGKINIDIDRIAAGLPCGSEGFLLMYARWKKLERD LYNERKVRFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVSQLLADGVIPNEYGINPKQRLKIGSKIARRLLGKILIDLRNTREEAISVAELKCNEDQ QSTSKKSEKEDTDYQLKLSIKNDDVRRTSTTSDISMDQDDDDDKETKYRLDPKYANVKTPGRHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVC QNALERLYKTKELDYMSYIVLRMFENTEVALEDPKRFRIEMTFSRGADLSPLEKNDSEATSLHQEHTLPIMGPERLQEVGSYPTLEKMEMMFRPFAMPAE DFPPPSTPAGFSGYFSKSAVLERLVNLWPFHKHDKHASANGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15070			Phosphoglycerate mutase-like f...		Potri.017G076400 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.002G261000 [exp]	7.74	0.8779
AT1G10690			unknown protein		Potri.010G045200 [exp]	8.36	0.8720
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.004G065800 [exp]	9.27	0.9021
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	10.19	0.8989	CAT5.1
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.011G087200 [exp]	10.39	0.8873	Pt-VTC2.1
AT3G49055			unknown protein		Potri.015G146100 [exp]	14.69	0.8786
					Potri.003G154150 [exp]	20.73	0.8549
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G005400 [exp]	21.84	0.8510
AT5G45920			SGNH hydrolase-type esterase s...		Potri.004G053800 [exp]	22.00	0.8650
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.018G113300 [exp]	22.31	0.8969

Compare expression of checked genes

Potri.017G076400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.