Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47960 679 / 0 Major facilitator superfamily protein (.1) AT5G62680 667 / 0 Major facilitator superfamily protein (.1) AT1G18880 664 / 0 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G69870 546 / 0 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 493 / 7e-169 NRT1.6 nitrate transporter 1.6 (.1) AT1G52190 429 / 1e-143 Major facilitator superfamily protein (.1) AT5G28470 425 / 8e-143 Major facilitator superfamily protein (.1) AT1G68570 414 / 7e-138 Major facilitator superfamily protein (.1) AT3G16180 403 / 8e-134 Major facilitator superfamily protein (.1) AT1G69860 397 / 8e-132 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351200 [exp] 1032 / 0 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 769 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 753 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 561 / 0 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.016G103200 [exp] 451 / 2e-152 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.006G091600 [exp] 449 / 1e-151 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 445 / 6e-150 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 423 / 2e-141 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 417 / 3e-139 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015351 [exp] 788 / 0 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 692 / 0 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 666 / 0 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 550 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 543 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10024345 [exp] 442 / 7e-149 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 439 / 2e-147 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 428 / 7e-143 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 421 / 1e-140 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 411 / 5e-136 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.017G076800.1 pacid=42814060 polypeptide=Potri.017G076800.1.p locus=Potri.017G076800 ID=Potri.017G076800.1.v4.1 annot-version=v4.1 ATGGGGGATGAAGAGAAAAAGACTCCCACGTCCCTCGAGACCTCCATGGAGAATGGAAGGGAGGAGAAAACCACCTCAAATGACGAGCCAGTGGTTAAAT ACGGAGGAATTAAAGCCATGCCCTTTGTCATTGGAAACGAGACCTTTGAGAAGCTCGGCACAGTTGGCTCCTTGACAAATCTTGTTGTGTATCTGACAAC AGTTTTCAACATGAAGGGTGTCACTGCCACCACATTCCTTAATGTCTTCAGTGGAACCACCAACTTGGCACCTCTTCTTGGAGCTTACCTCACTGACACT TACTTCGGACGCTACAAAACTTTGGGTTTTGCTTCGATCTCTTCTTTCGTGGGAATGGTGGCGTTAATGCTAACAGCAGCAATCTCCACTCTGCACCCTC CAGAGTGTGCGCCAGGAGGTGCGTGCGCTGGGCCAACAACTTGGCAATTAGCCTTCCTGCTGAGTGCGTTTGCCTTTTTGATAATCGGAGCTGGTGGCAT ACGGCCCTGCAACCTAGCCTTTGGAGCAGATCAATTCAATCCCAATACTGAATCTGGCAAGAGGGGTATCAACAGTTTCTTCAATTGGTACTACTTTACC TTCACGTTCGCCGTGATGATATCGGTGACTGGCATTGTCTATGTGCAATCAAACATTAGCTGGCCCATTGGTTTCGGAATTCCGGCATTCCTAATGTTCC TTTCTTGTGTAATGTTCTTTGTGGGAACAAGAATTTATGTTATAGTGAAACCTGAAGGCAGCCCCATAAGTAGTGTGGTGCATGTAATTGTTGCTGCTAC GAAGAAACGAGGCCTGAAGCTTCCTGAAAACTCAACTGTCTCTCTTTTCAGCTACATTCCGGCCAAATCTATCAACTCTAAGCTTCCTCGCACGGAACAA TTTAGGTTTCTTGACAAAGCTGCGATCATTACAGATGGAGATCAAATTAATTTGGATGGTTCAGCTACTAACCCATCGAAACTTTGTAGCATCCAGCAAG TCGAGGAAGTGAAGTGTTTGCTGAGGATAATTCCCATATGGTCAACATCCATACTTTATCATATTCCCTTGATCCAGCAACAGACTTATGCAGTTTTCCA AGCCCTTCAGATGGATAGACGTCTGGGCACCAGTTTTGAGGTGCCTGCCGCAACGTACGTAATCTTTACAATGATAACCCTCACCATCTGGATTCCCCTC TATGACCGAATCATTGTTCCGTTTCTTCAAAGGCTTACTGGCAAAGAAGGTGGACTAACATTGCTTCAAAGAATGGGAATTGGAATGGTTCTGGCAATGC TTTGTACGATCGTTTCTGGGTTGGTAGAAGGAAACAGAAGGCACGTTGCTTTAACAAGGCCAACCATAGGCATTACAAGTAAAGGAGGCGCTATATCATC ATTGTCTGCCATGTGGCTGATACCACAACTTTCACTCTCTGGACTTTCAGAGGGTTTCAATTATATTGCACAGATCGAGTTCTACTACAAGCAATTCCCA GAAAATATGAGGAGTATCGCTGGGTCATCCTTTTTCGCAGGTATTGCTATCTCTAATTATCTAAGTGGTTTCCTAGTTACTATAGTCCACCGCATTACTT CAGGGAGTAAATCTGGAGACTGGTTGGACGATGATCTTAACAAAGGGAAATTGGATTGCTTCTATTACGTGATCGTTGGTCTGGGGATCCTCAACTTCTG CTATTTTCTTTTGTGTGCCAAATGGTATAAATATAAAGATGGTGATATTTCCACAGTGGAGATGGCTACAAAGGGATCGCAGAAGCATATTGTATGA
AA sequence Show only first row Show all	>Potri.017G076800.1 pacid=42814060 polypeptide=Potri.017G076800.1.p locus=Potri.017G076800 ID=Potri.017G076800.1.v4.1 annot-version=v4.1 MGDEEKKTPTSLETSMENGREEKTTSNDEPVVKYGGIKAMPFVIGNETFEKLGTVGSLTNLVVYLTTVFNMKGVTATTFLNVFSGTTNLAPLLGAYLTDT YFGRYKTLGFASISSFVGMVALMLTAAISTLHPPECAPGGACAGPTTWQLAFLLSAFAFLIIGAGGIRPCNLAFGADQFNPNTESGKRGINSFFNWYYFT FTFAVMISVTGIVYVQSNISWPIGFGIPAFLMFLSCVMFFVGTRIYVIVKPEGSPISSVVHVIVAATKKRGLKLPENSTVSLFSYIPAKSINSKLPRTEQ FRFLDKAAIITDGDQINLDGSATNPSKLCSIQQVEEVKCLLRIIPIWSTSILYHIPLIQQQTYAVFQALQMDRRLGTSFEVPAATYVIFTMITLTIWIPL YDRIIVPFLQRLTGKEGGLTLLQRMGIGMVLAMLCTIVSGLVEGNRRHVALTRPTIGITSKGGAISSLSAMWLIPQLSLSGLSEGFNYIAQIEFYYKQFP ENMRSIAGSSFFAGIAISNYLSGFLVTIVHRITSGSKSGDWLDDDLNKGKLDCFYYVIVGLGILNFCYFLLCAKWYKYKDGDISTVEMATKGSQKHIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	2.00	0.9551
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	4.89	0.9227
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.008G095200 [exp]	5.00	0.8865
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	5.29	0.9405
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	5.74	0.9153
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	5.74	0.9405
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	6.00	0.9382
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	6.48	0.9250	Pt-BMY.1
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	6.78	0.8896
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	7.07	0.9390

Compare expression of checked genes

Potri.017G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.