Plant FIBer expression Database

Potri.017G077000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28700 731 / 0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015353
[exp]
728 / 0 AT3G28700 706 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
Lus10007271
[exp]
723 / 0 AT3G28700 694 / 0.0 Protein of unknown function (DUF185) (.1), Protein of unknown function (DUF185) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Potri.017G077000.1 pacid=42813084 polypeptide=Potri.017G077000.1.p locus=Potri.017G077000 ID=Potri.017G077000.1.v4.1 annot-version=v4.1
ATGCTTACCAGACACTTACTAAAGCAAGCTTCAACCTGCCGTCATTTCCTCTTGAATTCTAAAACTTCTTCTCCTTTGTTAACTAAATCTCTTCTTTTCT
CTTCTTCTTCTTCTTCTTCTCCAGAATCACAAAGCCCCACCACTACTTTCGTCGACGACAAGGTTACCGATCAATATCCCTCTAGCACCTCCATCTCCAT
TGACCGTTCCGACCTATATAATCCACCTGATCATTCTCATGAACCCACATCGGAGTCTGAGCTTGTCAAGCACCTTAAAGGCATTATCAAGTTCCGAGGT
GGCCCAATCTCAGTGGCAGAGTATATGGAAGAAGTTTTGACGAATCCCAAGTTTGGATTCTACATTAGTCGAGATGTGTTTGGAACAGAAGGTGATTTCA
TTACATCTCCTGAAGTAAGCCAGATGTTTGGTGAGATGGTTGGTGTATGGGCCATGTGCCTTTGGGAGCAAATGGGACGGCCAAAACAAGTGAACCTAGT
TGAGCTGGGTCCAGGACGAGGAACTCTGATGGCTGATCTTCTGCGTGGTGCATCCAAGTTTAAGAGCTTCACAGAATCGTTGCATGTACACTTGGTAGAA
TGTAGTCCTACGTTACAGAAGCTTCAGCATCACAACTTAAAATGTTTAGATGAAGACGATAACGGTGATGGTGTTGAAAAAAGGACCATCAGCACGTTGG
CAGGGACACTTGTGTCATGGCATGCTTTGCTAGAGCAGGTTCCATCAGGATTGCCATCAATTATCATTGCCCATGAGTTTTACGATGCTCTACCTGTGCA
TCAGTTTCAGAGAGCTTCTCGTGGCTGGTGTGAAAAAATGGTTGATGTTTCGGAAGATTCAATGTTCCGTTTTGTTCTATCCCCACAGCCAACACCAGCA
ACTCTATATTTAATGAAGCGCTGCAAGTGGGCTGCACCTGAAGAAATAGAGAAGCTTAGTCATATTGAGGTTTGCCCCAAAGCAATGGATTTAACACATG
CTATTGCTGACAGAATAGGTTGTGATGGAGGAGGGGCCCTGATTATTGACTATGGCCTAAATGGAGTAGTCTCAGATAGTCTGCAGGCAATTAGGAAACA
CAAGTTCATCAACATACTCGATAATCCTGGGTCAGCTGATCTCAGTGCATATGTCGATTTTGCTTCCATCAGGCACTCTGCTGAGGAAGTGTCAGCCGAT
ATCTCTGTCCATGGACCAATAACTCAGTCCCAATTTCTTGGTGCTCTCGGCATAAACTTCCGAGTGGAATCGTTGCTGCAGAACTGCACAGATGAACAAG
CTGATTCCCTGAGGACAGGATACTGGCGTCTGGTAGGTGAAGGTGAAGCCCCATTTTGGGAGGGACCTGATGAACAGGTGCCCATTGGAATGGGTACTCG
GTATCTGGCAATGGCCATCGTGAACACGAAGCAAGGTGTTCCAGTTCCATTTCAATGA
AA sequence
>Potri.017G077000.1 pacid=42813084 polypeptide=Potri.017G077000.1.p locus=Potri.017G077000 ID=Potri.017G077000.1.v4.1 annot-version=v4.1
MLTRHLLKQASTCRHFLLNSKTSSPLLTKSLLFSSSSSSSPESQSPTTTFVDDKVTDQYPSSTSISIDRSDLYNPPDHSHEPTSESELVKHLKGIIKFRG
GPISVAEYMEEVLTNPKFGFYISRDVFGTEGDFITSPEVSQMFGEMVGVWAMCLWEQMGRPKQVNLVELGPGRGTLMADLLRGASKFKSFTESLHVHLVE
CSPTLQKLQHHNLKCLDEDDNGDGVEKRTISTLAGTLVSWHALLEQVPSGLPSIIIAHEFYDALPVHQFQRASRGWCEKMVDVSEDSMFRFVLSPQPTPA
TLYLMKRCKWAAPEEIEKLSHIEVCPKAMDLTHAIADRIGCDGGGALIIDYGLNGVVSDSLQAIRKHKFINILDNPGSADLSAYVDFASIRHSAEEVSAD
ISVHGPITQSQFLGALGINFRVESLLQNCTDEQADSLRTGYWRLVGEGEAPFWEGPDEQVPIGMGTRYLAMAIVNTKQGVPVPFQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G28700 Protein of unknown function (D... Potri.017G077000
[exp]
0 1
AT4G23420 NAD(P)-binding Rossmann-fold s... Potri.012G143800
[exp]
3.31 0.6315
AT2G27790 RNA-binding (RRM/RBD/RNP motif... Potri.009G167600
[exp]
3.74 0.6287
AT2G19490 recA DNA recombination family ... Potri.018G067900
[exp]
5.47 0.6255
AT2G32170 S-adenosyl-L-methionine-depend... Potri.006G023400
[exp]
13.41 0.5671
AT1G31190 IMPL1 myo-inositol monophosphatase l... Potri.015G120400
[exp]
16.73 0.6233
Potri.003G157401
[exp]
34.20 0.5617
AT1G28340 AtRLP4 receptor like protein 4 (.1) Potri.004G047300
[exp]
49.12 0.5341
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
74.75 0.5262
AT2G18850 SET domain-containing protein ... Potri.006G168900
[exp]
77.33 0.5157
AT3G20810 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II... Potri.001G016200
[exp]
79.51 0.5138

Potri.017G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.