Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04680 655 / 0 CLPS3 CLP-similar protein 3 (.1.2) AT5G39930 435 / 6e-151 CLPS5 CLP1-similar protein 5 (.1) AT5G11010 74 / 2e-14 Pre-mRNA cleavage complex II protein family (.1.2.3) AT5G39920 49 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073500 [exp] 66 / 1e-11 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015355 [exp] 749 / 0 AT3G04680 674 / 0.0 CLP-similar protein 3 (.1.2) Lus10007269 [exp] 623 / 0 AT3G04680 571 / 0.0 CLP-similar protein 3 (.1.2) Lus10014756 [exp] 71 / 7e-13 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10036655 [exp] 68 / 4e-12 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033124 [exp] 67 / 5e-12 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [poplar] [flax] Clp1 Pre-mRNA cleavage complex II protein Clp1 PF16573 [poplar] [flax] CLP1_N N-terminal beta-sandwich domain of polyadenylation factor CL0023 [poplar] [flax] P-loop_NTPase PF16575 [poplar] [flax] CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop
Representative CDS sequence Show only first row Show all	>Potri.017G077200.3 pacid=42813373 polypeptide=Potri.017G077200.3.p locus=Potri.017G077200 ID=Potri.017G077200.3.v4.1 annot-version=v4.1 ATGGCTTACGGTGGTGCAGGCACGGCCTCAACGACAAGGCAAGTTAAGTTAGAGAAAGAGAGCGAGCTGAGAATCGAAGTAGCTAACGACACTCCGCTTC GCTTAAGACTCCTAAACGGCACCGCAGAGATCTTTGGCACCGAGCTTCCCCCTCAAATCTGGCTCACCTTCCCTCCTCACTTCAAATTCGCTGTTTTTAC TTGGTATGGAGCCACAATTGAGATGGATGGTTCTACGGAGACCGATTATACAGCTGATGAGACTCCTATGGTTAGTTATGTAAATGTGCACGCTGTGCTC GACGGACGAAGAAACCAGGCTAAAGCATCTCCTGAATCTTCTCAGGGCCCTAGGGTGATTGTTGTTGGACCTACAGATTCAGGAAAGAGTACATTGTCGA GGATGCTTCTCAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACTTTTGTGGACTTGGATATAGGCCAAGGATCTATAACTGCTCCTGGATGCATTGCTGC CACCCCCATTGAGTTGCCTATTGATCCAGTCGAAGGCATTTCGCTTGAAATGCCTCTTGTTTACTTCTATGGCCACACAACTCCCAGCCAAAATGTGGAT CTGTACAAAGCACTTGTAAAGGAGCTTGCTCAAATATTGGAAAGACAATTTACTGGAAATGCTGAATCTCGTGCTTCAGGCATGGTGATCAACACCATGG GATGGATAGAAGGTGTAGGCTATGAGTTGCTTCTTCATGCAATTGATACATTCAATGCTAATGTGGTCTTGGTTTTGGGTCAGGAAAAGCTTTTCAGCAT GCTCCGGGATGTGCTAAAGAGCAAGCCTAATGTGGATGTTCTGAAACTTCAAAAGTCAGGTGGTGTTGTTTCCAGGAGTTCAAAATTCCGCCAGAAGTCT AGAAGTTACAGGATTAGGGAATATTTCTATGGCATTGCTAATGATCTTTCTCCACATTCAAATATTGCAAATTTTAGTGATTTGTCTGTGTATCGAATTG GTGGCGGACCACAAGCCCCAAGATCAGCTCTGCCAATTGGGGCTGACCCTGTTGCCAACCCTCTGCGAGTTGCACCCGTTAATTTTGATCGAGATCTGCT CCATGTTGTTCTTGCTGTTTCATATGCTCAAGAACCTGATCAAATTGTTTCTAGTAACATTGCTGGATTCATCTACGTCACGGACATTGATCTTCAAAGG AGAAAAATTACATACCTTTCCCCAACAGCAGGGGAACTTCCAAGTAAATATTTGGTCATGGGAACGTTAACATGGCTTGAAACTTGA
AA sequence Show only first row Show all	>Potri.017G077200.3 pacid=42813373 polypeptide=Potri.017G077200.3.p locus=Potri.017G077200 ID=Potri.017G077200.3.v4.1 annot-version=v4.1 MAYGGAGTASTTRQVKLEKESELRIEVANDTPLRLRLLNGTAEIFGTELPPQIWLTFPPHFKFAVFTWYGATIEMDGSTETDYTADETPMVSYVNVHAVL DGRRNQAKASPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITAPGCIAATPIELPIDPVEGISLEMPLVYFYGHTTPSQNVD LYKALVKELAQILERQFTGNAESRASGMVINTMGWIEGVGYELLLHAIDTFNANVVLVLGQEKLFSMLRDVLKSKPNVDVLKLQKSGGVVSRSSKFRQKS RSYRIREYFYGIANDLSPHSNIANFSDLSVYRIGGGPQAPRSALPIGADPVANPLRVAPVNFDRDLLHVVLAVSYAQEPDQIVSSNIAGFIYVTDIDLQR RKITYLSPTAGELPSKYLVMGTLTWLET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	0	1
AT3G07910			unknown protein		Potri.009G071900 [exp]	2.44	0.7558
AT1G16916			unknown protein		Potri.011G109100 [exp]	10.53	0.6283
AT1G03330			Small nuclear ribonucleoprotei...		Potri.003G014900 [exp]	14.56	0.7040
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	15.77	0.7142
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	18.57	0.6888
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Potri.007G101100 [exp]	23.23	0.6553	KIWI.1
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Potri.007G139700 [exp]	24.37	0.7186
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	24.49	0.6579
AT1G62350			Pentatricopeptide repeat (PPR)...		Potri.001G275000 [exp]	29.46	0.6449
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.002G228300 [exp]	31.30	0.6535

Compare expression of checked genes

Potri.017G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.