Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 691 / 0 Protein kinase superfamily protein (.1) AT3G01300 662 / 0 Protein kinase superfamily protein (.1) AT3G28690 656 / 0 Protein kinase superfamily protein (.1.2.3) AT1G07570 439 / 3e-152 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 438 / 1e-151 APK1B protein kinase 1B (.1.2.3) AT5G02290 432 / 1e-149 NAK Protein kinase superfamily protein (.1.2) AT5G01020 430 / 1e-148 Protein kinase superfamily protein (.1) AT2G02800 428 / 1e-147 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 417 / 2e-143 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G39660 414 / 1e-142 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123800 [exp] 868 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 729 / 0 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 725 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 688 / 0 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 491 / 2e-172 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 485 / 6e-170 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 461 / 1e-160 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 461 / 1e-160 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 451 / 7e-157 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030668 [exp] 780 / 0 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 778 / 0 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 686 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 484 / 3e-169 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 478 / 6e-167 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10013273 [exp] 480 / 3e-159 AT3G17900 696 / 0.0 unknown protein Lus10024391 [exp] 451 / 9e-157 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 448 / 1e-155 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 445 / 6e-155 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 446 / 1e-154 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G077300.1 pacid=42813038 polypeptide=Potri.017G077300.1.p locus=Potri.017G077300 ID=Potri.017G077300.1.v4.1 annot-version=v4.1 ATGAAGATGAAGATGGGTTTGAGTCCAGATTCTGTAAAGGTAAAGAATTCTAATGAGAAATCAAAGAGCAAGAAAAATAAGAAAAATGGTAAGGATGAGG AGGATATGGGATGTTGGTTTAAACTCAGATTGCTGGGAAGCTGCATGCCTTCAAGATCAAAAGTTGATAGCTCTTTAAGTGGCATCTCAACTCATTATGC GCAAAGTAAATCTACAAATGATAAGAACAAAGACCAACCAGTTGTTCCAGCAATGTCTTCCACTACCACAACTAGCAATGCAGAGAGTGCATCCTCATTT CCAACATTTAGTGAGGAATTGAAGCTTGCTTCTCAGCTCCGAAAATTTACATTTAATGACCTTAAGTTAGCAACTAGAAACTTTAGGCCTGAGAGTCTTC TTGGGGAGGGTGGGTTTGGGTGTGTCTTCAAAGGTTGGATTGAGGAGAACGGAACTGCTCCTGTGAAACCTGGCACTGGGCTTACTGTTGCAGTGAAAAC CCTCAACCATGATGGCCTTCAGGGTCATAAAGAGTGGCTAGCTGAAGTTAGTTTTCTTGGGAATCTTCTCCATAAAAACTTGGTAAAATTGGTTGGTTAC TGCATTGAAGATGATCAAAGGTTGCTGGTGTATGAGTTCATGCCTAGAGGAAGTTTGGAGAATCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGT CTATCAGGATGAAAATTGCTCTTGGTGCTGCGCAAGGTCTTGCTTTCCTTCATGAGGAGGCTGACAGACCAGTAATATATCGTGATTTTAAAACATCTAA TATATTATTAGATGCGGACTACAATTCCAAACTTTCTGATTTTGGACTTGCCAAGGATGCTCCTGATGGAGGCAAAACTCATGTGTCTACCAGAGTTATG GGAACCTATGGCTATGCTGCCCCAGAATATGTGATGACTGGACATTTGACTTCAAAGAGCGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATGCTCA CTGGCCGAAGATCAATGGACAAAAACCGACCAAATGGGGAGCACAACCTTGTGGAATGGGCAAGGCCACATTTTGGGGACAAGAGAAGGTTCTACCGCAT ATTAGACCCTCGCCTTGAAGGCCATTTCTCAATCAAAGGTGCTCAGAAAGCTATTCAATTGGCTGCCCAGTGTCTTAGCCGTGACCCCAAATCCAGGCCC CGGATGAGTGAAGTTGTTGAAGCACTAAAGCCTTTACCAAACTTAAAGGATATGGCTAGCTCTTCGTACTACTTCCAAACTATGCAAGCAGATCGTAACA AATCAAACATGAATGCTAAAAATGGCATTAGAACAAATGCAGGATTCATAACAAGGAACGGACAACCACTGAGGAGCTTAAGTGATGTGCGTGCATCTCC ATATAACCAGCCTCGGCAGTCACCAAAACCTAGAGGGAAAAACTCATAG
AA sequence Show only first row Show all	>Potri.017G077300.1 pacid=42813038 polypeptide=Potri.017G077300.1.p locus=Potri.017G077300 ID=Potri.017G077300.1.v4.1 annot-version=v4.1 MKMKMGLSPDSVKVKNSNEKSKSKKNKKNGKDEEDMGCWFKLRLLGSCMPSRSKVDSSLSGISTHYAQSKSTNDKNKDQPVVPAMSSTTTTSNAESASSF PTFSEELKLASQLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVSFLGNLLHKNLVKLVGY CIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAQGLAFLHEEADRPVIYRDFKTSNILLDADYNSKLSDFGLAKDAPDGGKTHVSTRVM GTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHFGDKRRFYRILDPRLEGHFSIKGAQKAIQLAAQCLSRDPKSRP RMSEVVEALKPLPNLKDMASSSYYFQTMQADRNKSNMNAKNGIRTNAGFITRNGQPLRSLSDVRASPYNQPRQSPKPRGKNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	0	1
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	1.00	0.8896
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	2.00	0.8507
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	3.16	0.8580
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	3.87	0.8222	Pt-TGA3.2
AT3G53670			unknown protein		Potri.006G082100 [exp]	4.89	0.8077
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	5.83	0.8145
AT5G09390			CD2-binding protein-related (....		Potri.003G023700 [exp]	5.91	0.8401
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.011G168500 [exp]	6.00	0.8374
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	8.48	0.8142
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	9.48	0.8354

Compare expression of checked genes

Potri.017G077300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.