Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 332 / 2e-109 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 207 / 4e-61 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36790 199 / 5e-58 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36780 198 / 9e-58 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 195 / 1e-56 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36770 194 / 2e-56 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 194 / 3e-56 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 192 / 9e-56 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT3G53150 192 / 1e-55 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G36750 191 / 3e-55 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077800 [exp] 908 / 0 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077500 [exp] 894 / 0 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 892 / 0 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 411 / 3e-140 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016300 [exp] 411 / 3e-140 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 396 / 1e-134 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098966 [exp] 229 / 9e-70 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 227 / 9e-69 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 225 / 3e-68 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025513 [exp] 514 / 5e-180 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10031819 [exp] 340 / 2e-112 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10031248 [exp] 338 / 1e-111 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10014086 [exp] 225 / 5e-68 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019832 [exp] 213 / 4e-63 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019833 [exp] 207 / 1e-61 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014083 [exp] 207 / 4e-61 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 203 / 1e-59 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10003323 [exp] 198 / 1e-57 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10014082 [exp] 194 / 1e-56 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G077700.1 pacid=42813576 polypeptide=Potri.017G077650.1.p locus=Potri.017G077700 ID=Potri.017G077700.1.v4.1 annot-version=v4.1 ATGGCGTCTAAATCTATTGAACAGATAGTGATGCTCCCGTTTATGGCGCATGGCCATCTCATACCTTTTCTTGCTCTTGCAAGACAGATCCATCAAGCAA CTGGTTTCAAAATATCCATTGCAAGCACCCCTCTCAACATCCAGTACCTTTCTTCCACCTTCAACTCCTCCTCCGATGAACCAGAAAATGACCATATCCA CCTCCTTGAGCTACCTTTTTGCAGTACTGATTATGGCTTGCCTCCAAACACTGAAAACTCCGAGAACTTGTCTCTGGATTCGATTGGCAAACTTTTCTCT CCATCGCTAAGTCTTAAGAAACCATTTCACAGCCTTGTATCTGATATTGCAGCTAAACAAGGTCACCCCCCACTTTGTATAATATCAGATGTTTTCCTTG GATGGGCAACTGAAGTTGCGAGCTGTGGTGCTTATGGAACCTTGGCTTACTCATCTCTTTGGCTCAATCTTCCTCATCGAGGTAGAAGTGATTCTGATGA GTTTCATTTGCCGGGATTTCCTGATAGCTGTCGCTTTCACATCAATCAGTTGCATCATTTCTTAAGAAATGCTGATGGCACTGATTCTTGGTCTAAGTTT TTTCAGTCACAGATCTCACTTTCAATGCAATCTTTTGGGTGGTTGTGCAATACAGCTGAGGAATTTGAGCCTGCAGGATTGGAATGGTTGAGGAACTTTG TCAAACTTCCTGTCTGGGCTATAGGGCCTCTTCTGCCACCAATTGTGCTCAAGAATGATTATTCTTCTTTATCTGTAGCTGCATCAGGTATAAGCACAAG ACATGCTAGTAAAAGACCAGAGATTTCTGTTGAGAAATGCATGGAATGGCTTGAATCGCACAGTCCAGCTTCGGTGCTCTATATTTCTTTTGGTTCTCAA AACAGCATAAGTCCCTCCCAGATGATGGAGCCTCCTGTTGGTTTTGAACCAAAAAGTGAATTTAGAGCAGAATACTTGCCAGAAGGATTTGAAGAAAGAA TGGAGAAAAGAAAACAAGGTTTGTTGGTGAGGAACTGGGCGCCCCAATTGGAGATTTTGTCACACAAGTCCACAGGAGCATTCCTAAGCCACTGTGGGTG GAATTCAGTGTTGGAAAGCTTGAGCCAAGCTGTGCCAATTATAGGATGGCCTTTGGCCGCTGAACAGGCCTATAATTCCAAAATGCTGGTAGAGGAGATG GGTGTGAGTGTGGAGCTGACAAGAGGACTGCAGAGCAGCATAGATTGGAAGGTGGTGAAGAAAGTGATAGAGTTGGTGATGGACAAGAAAGGGAAGGGAG GTGATATGAGGAGCAAGGCAATGGTGATTAAAGAACAGTTAAGGGCATCAGTGAGAGATGAAGGAGAAGACAAAGGATCTTCTGTTTAA
AA sequence Show only first row Show all	>Potri.017G077700.1 pacid=42813576 polypeptide=Potri.017G077650.1.p locus=Potri.017G077700 ID=Potri.017G077700.1.v4.1 annot-version=v4.1 MASKSIEQIVMLPFMAHGHLIPFLALARQIHQATGFKISIASTPLNIQYLSSTFNSSSDEPENDHIHLLELPFCSTDYGLPPNTENSENLSLDSIGKLFS PSLSLKKPFHSLVSDIAAKQGHPPLCIISDVFLGWATEVASCGAYGTLAYSSLWLNLPHRGRSDSDEFHLPGFPDSCRFHINQLHHFLRNADGTDSWSKF FQSQISLSMQSFGWLCNTAEEFEPAGLEWLRNFVKLPVWAIGPLLPPIVLKNDYSSLSVAASGISTRHASKRPEISVEKCMEWLESHSPASVLYISFGSQ NSISPSQMMEPPVGFEPKSEFRAEYLPEGFEERMEKRKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQAVPIIGWPLAAEQAYNSKMLVEEM GVSVELTRGLQSSIDWKVVKKVIELVMDKKGKGGDMRSKAMVIKEQLRASVRDEGEDKGSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077800 [exp]	1.73	0.9118
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	4.89	0.8247
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	8.24	0.8536
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	10.95	0.8046
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	13.67	0.7794	Pt-PAP.2
AT3G48550			unknown protein		Potri.012G097901 [exp]	14.69	0.7985
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	15.49	0.7740
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	16.43	0.7627
AT5G39240			unknown protein		Potri.017G093000 [exp]	18.76	0.7659
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.003G167700 [exp]	19.07	0.7981

Compare expression of checked genes

Potri.017G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.