Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62740 487 / 5e-176 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 461 / 8e-166 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT3G01290 436 / 5e-156 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 326 / 2e-112 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 51 / 3e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 47 / 9e-06 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070500 [exp] 479 / 6e-173 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 469 / 7e-169 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 327 / 1e-112 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 325 / 7e-112 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 316 / 1e-109 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 50 / 7e-07 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 49 / 2e-06 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 48 / 4e-06 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007268 [exp] 488 / 1e-176 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 484 / 4e-175 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 483 / 1e-174 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 469 / 8e-169 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10037213 [exp] 464 / 6e-167 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10036715 [exp] 461 / 1e-165 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10015032 [exp] 317 / 6e-109 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 317 / 1e-108 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 49 / 2e-06 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Potri.017G078100.1 pacid=42814183 polypeptide=Potri.017G078100.1.p locus=Potri.017G078100 ID=Potri.017G078100.1.v4.1 annot-version=v4.1 ATGGGCAACCTGTTAGGCTGTGTAAAAGTGGACCAATCCACGGTTGTTATCAAGGAGAGATTTGGAAAGTTTAATGAAGTTCTTGAACCTGGATGCCACT GCATGCCATGGTTCCTTGGAAGTCAGGTTGCTGGCCATCTCACACTTCGATTGCAGCAGTTGGATGTTCGTTGCGAGACAAAGACAAAGGATAATGTGTT TGTCAATGTTGTTGCATCGGTGCAATACCGTGCCCTTGCTCATAAAGCAAGTGATGCTTTCTACAAACTTACCAACACTCGATCTCAAATCCAAGCCTAT GTTTTTGATGTGATCAGGGCAAGTGTTCCAAAACTACTCTTGGATGATGTTTTCGAGCAAAAGAACGAAATAGCAAGAGCTGTTGAAGAGGAGCTTGAAA AGGCCATGTCTGCATATGGTTATGAAATCGTCCAGACACTCATTGTTGATATAGAACCTGATGAACATGTGAAACGGGCCATGAATGAGATTAATGCTGC TGCAAGGATGAGGTTAGCTGCTAATGAGAAAGCCGAAGCTGAGAAAATCATCCAGATTAAGCGAGCTGAGGGTGAGGCTGAGTCCAAGTACCTAGCTGGA TTAGGTATTGCCCGGCAGCGCCAGGCAATTGTGGATGGTCTGAGAGACAGCGTGCTTGGCTTCTCTGATAATGTGCCAGGAACTTCAGCTAAGGATGTTT TGGACATGGTGCTTATCACACAGTACTTTGACACCATGAAGGAGATTGGTGCGTCCAGTAAATCCTCAGCAGTTTTCATCCCTCACGGCCCTGGTTCTGT TAGGGACATTGCTACCCAGATCAGAGATGGGCTGCTTCAGGCATCTGCTCCTCAGTAA
AA sequence Show only first row Show all	>Potri.017G078100.1 pacid=42814183 polypeptide=Potri.017G078100.1.p locus=Potri.017G078100 ID=Potri.017G078100.1.v4.1 annot-version=v4.1 MGNLLGCVKVDQSTVVIKERFGKFNEVLEPGCHCMPWFLGSQVAGHLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALAHKASDAFYKLTNTRSQIQAY VFDVIRASVPKLLLDDVFEQKNEIARAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEAEKIIQIKRAEGEAESKYLAG LGIARQRQAIVDGLRDSVLGFSDNVPGTSAKDVLDMVLITQYFDTMKEIGASSKSSAVFIPHGPGSVRDIATQIRDGLLQASAPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	0	1
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	1.41	0.9330
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	3.46	0.9262
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.002G021500 [exp]	6.32	0.9003	CYP1.2
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023022 [exp]	9.89	0.9158
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	9.94	0.9266
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	10.48	0.8976
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151232 [exp]	11.83	0.9254
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095500 [exp]	12.48	0.9067
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	13.74	0.9115	Pt-CYP704.1
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	14.83	0.9108

Compare expression of checked genes

Potri.017G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.