Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 415 / 7e-148 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 393 / 2e-139 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 271 / 3e-91 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 256 / 3e-85 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 160 / 2e-48 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 91 / 1e-22 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194900 [exp] 444 / 2e-159 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 441 / 3e-158 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 291 / 4e-99 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 285 / 1e-96 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.005G146800 [exp] 266 / 2e-89 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 258 / 4e-86 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 254 / 1e-84 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 180 / 9e-56 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 177 / 1e-53 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013271 [exp] 422 / 8e-151 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 419 / 2e-149 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 416 / 2e-148 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 409 / 7e-145 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 297 / 6e-101 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 280 / 7e-94 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 242 / 1e-79 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 235 / 6e-77 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 229 / 2e-74 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 226 / 2e-73 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01459 [poplar] [flax] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Potri.017G078200.1 pacid=42813320 polypeptide=Potri.017G078200.1.p locus=Potri.017G078200 ID=Potri.017G078200.1.v4.1 annot-version=v4.1 ATGGTTAACGGTCCAGGTCTTTACAGTGAGATTGGCAAGAAGGCCAGAGATCTCTTGTACAAGGACTACCAGACTGACCACAAGTTCACTCTAAACACCT CCTCTCCTACTGGTGTTACTATCACATCCTCTGGAACAAAGAAAGGTGACTTGCTTGCTGCTGATGTCAATACTCAGCTGAAGAACAAGAATATCACAAC TGATATCAAAGTGGACACAAGCTCCAATCTTTTTACAACCATTACGGTTGATGAACCTGCTCCTGGTCTGAAGACAATCTTCAGCTTCAAAGTACCTGAT CAAAGGTCTGGCAAGGTGGAAATACAGTATTTGCATGACTATGCAGCTGTAAGCTCAAGCGTTGGGTTGACAGTAAACCCGATTGTTAACTTCTCAGGTG TGATTGGGACCAATGTCGCCTCACTTGGAACAGATCTTTCATTTGACACCAAAACTGGGGACTTCATCAAATGCAATGCTGGAGTTAGCTTGTCAAAAGT TGACCTGATTGCCTCATTGACTTTGAATGACAAGGGTGATTCTCTCAACGCATCCTACTACCATATTGTGAACCCGTTGACTGCTGTTGGTGCAGAAGTG AGTCATAGCTTCTCGTCCAATGAGAACACCATCACTGTTGGTGCACAGCATGCATTGGATCCATTGACGACATTGAAGGCACGGGTGAACAATGCTGGCA AAGCAAGCGCTCTTGTTCAGCATCAGTGGCGGCCAAAGTCTTTCTTCACCGTTTCTGGAGAGGTAGACACCAAGGCGATCGAGAAGACTGCAAAAGTTGG ATTGGCTCTAGCTCTCAAGCCATGA
AA sequence Show only first row Show all	>Potri.017G078200.1 pacid=42813320 polypeptide=Potri.017G078200.1.p locus=Potri.017G078200 ID=Potri.017G078200.1.v4.1 annot-version=v4.1 MVNGPGLYSEIGKKARDLLYKDYQTDHKFTLNTSSPTGVTITSSGTKKGDLLAADVNTQLKNKNITTDIKVDTSSNLFTTITVDEPAPGLKTIFSFKVPD QRSGKVEIQYLHDYAAVSSSVGLTVNPIVNFSGVIGTNVASLGTDLSFDTKTGDFIKCNAGVSLSKVDLIASLTLNDKGDSLNASYYHIVNPLTAVGAEV SHSFSSNENTITVGAQHALDPLTTLKARVNNAGKASALVQHQWRPKSFFTVSGEVDTKAIEKTAKVGLALALKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	0	1
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	1.00	0.8886
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	2.44	0.8862
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	3.87	0.8432
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	4.89	0.8207
AT4G39300			unknown protein		Potri.004G154800 [exp]	7.48	0.8160
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.007G069300 [exp]	10.53	0.7536
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	11.87	0.7451
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	12.64	0.7607
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	12.72	0.7811
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	13.03	0.8090	Pt-SYNC3.1

Compare expression of checked genes

Potri.017G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.