Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) AT3G01270 469 / 8e-163 Pectate lyase family protein (.1) AT1G14420 438 / 4e-151 AT59 Pectate lyase family protein (.1) AT2G02720 416 / 2e-142 Pectate lyase family protein (.1) AT4G13710 395 / 2e-134 Pectin lyase-like superfamily protein (.1.2) AT1G67750 384 / 9e-131 Pectate lyase family protein (.1) AT3G24670 383 / 1e-129 Pectin lyase-like superfamily protein (.1) AT3G07010 381 / 2e-129 Pectin lyase-like superfamily protein (.1) AT5G48900 379 / 1e-128 Pectin lyase-like superfamily protein (.1) AT4G24780 375 / 4e-127 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124100 [exp] 719 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.008G148800 [exp] 499 / 4e-175 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 483 / 3e-169 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.012G091500 [exp] 386 / 2e-131 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 385 / 3e-131 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 383 / 7e-130 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 382 / 3e-129 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G052300 [exp] 381 / 6e-129 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 381 / 8e-129 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005254 [exp] 585 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 579 / 0 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 567 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 475 / 7e-166 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 469 / 3e-163 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 446 / 2e-154 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 416 / 4e-145 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10023623 [exp] 419 / 6e-144 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10011885 [exp] 387 / 3e-131 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 386 / 5e-131 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase CL0268 [poplar] [flax] PF04431 [poplar] [flax] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Potri.017G078400.1 pacid=42813808 polypeptide=Potri.017G078400.1.p locus=Potri.017G078400 ID=Potri.017G078400.1.v4.1 annot-version=v4.1 ATGGCAGTGGGTAAGGCCAAGCTGATCTTTGCTATTACTCTTGCGACATTGATTCCTGGGCTGTTGGCAGACATTGCCTTCTTCGACGAAGTGTGGCAAA AACGAGCAGAGGAAGCAAAGAAAGTGACCTTGAACTCCTACATACCCAACCCGGAAGATGCAACCGATGATTTTAACTTTGAAGTTAACAAATACGCTCT TGCAAGAAACAGCAGTTTAAAACCAGACATTGTTGATGATTTTGGGAGCGCAAACAGCACTCTTGTGGACTTCGATGATGATCGTAATGATGCTGGCTTT GAACTGCACGCAAATAGCACTAGAAGGAACCTGAAGCAAGGAAAGAAAAAATACCTAGGTCCATGCAAGGTGACGAACCCAATTGACAAGTGCTGGAGGT GCAGGAGGAACTGGGCAAGAAACCGTAAGCGTCTGGCAAAATGTGCACTTGGTTTTGGGCGTAGGGCAACTGGAGGATTGAAAGGAAGGGTATATGTGGT TACTGAAAATTCGGACGACGATGTCATGAACCCAAAACCAGGGACTTTGCGACATGCTGTGATCCAAAAGGGGCCATTGTGGATCATATTTTCAAAGAAC ATGAACATTAGGTTGTCGAAAGAGCTGATTATGACTAGCCATAAGACGATTGATGGGCGTGGACACCATATACACATTGCTTATGGTGCTGGAATCACAA TACAATTCATCCAGAACGTAATCATTCATGGAATTCGGATCCATCACATTGTTGCTACTAGCGGTGGCAATATTAGGGATTCTGTGGAGCACTATGGGAT CAGGACCAACAGTGATGGGGATGGAATTTCCATCTTCGGATCCAGCAATATTTGGATCGATCACGTTTCCATGTCTCGCTGCACCGATGGTCTCATTGAT GCAATTATGGGATCCACAGCAATAACCATTTCAAATTCCCACTTCACCCACCACAACGATGCCATCTTGTTGGGTGCAAGTGACAGCTTCTCAGGCGATG AGCTTATGCAAGTCACGGTTGCGTTCAACCATTTTGGTCAGGGACTGGTACAGAGAATGCCAAGATGCCGATGGGGTTTCTTCCACGTTGTTAACAATGA CTACACTCACTGGCGCATGTATGCTATTGGTGGTAGCAAACACCCTACCATTATCAGCCAGGGTAACCGCTTCATCGCACCACCTGAACTTCATCTGAAA CAGGTGACGAAGAGGGACTATGCGACGGAATCTGAATGGAAAACATGGACATGGAGATCAGAGAATGATCTAATGATGAATGGAGCCTTCTTCATTGAAT CAGGCAAACCTAGAACCAAGAGACCTCATAAGAAGTTCATGATCACAGCCAAACCCGGTTCCCTTGCTACAAGAATGACACTCTTTGCTGGGGCACTTGA TTGCAAATCGGGTAGAAAATGTTAA
AA sequence Show only first row Show all	>Potri.017G078400.1 pacid=42813808 polypeptide=Potri.017G078400.1.p locus=Potri.017G078400 ID=Potri.017G078400.1.v4.1 annot-version=v4.1 MAVGKAKLIFAITLATLIPGLLADIAFFDEVWQKRAEEAKKVTLNSYIPNPEDATDDFNFEVNKYALARNSSLKPDIVDDFGSANSTLVDFDDDRNDAGF ELHANSTRRNLKQGKKKYLGPCKVTNPIDKCWRCRRNWARNRKRLAKCALGFGRRATGGLKGRVYVVTENSDDDVMNPKPGTLRHAVIQKGPLWIIFSKN MNIRLSKELIMTSHKTIDGRGHHIHIAYGAGITIQFIQNVIIHGIRIHHIVATSGGNIRDSVEHYGIRTNSDGDGISIFGSSNIWIDHVSMSRCTDGLID AIMGSTAITISNSHFTHHNDAILLGASDSFSGDELMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRMYAIGGSKHPTIISQGNRFIAPPELHLK QVTKRDYATESEWKTWTWRSENDLMMNGAFFIESGKPRTKRPHKKFMITAKPGSLATRMTLFAGALDCKSGRKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	24.08	1.0000
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	30.59	1.0000
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	39.54	1.0000
AT1G52900			Toll-Interleukin-Resistance (T...		Potri.001G403800 [exp]	43.42	1.0000
AT1G55790			Domain of unknown function (DU...		Potri.001G438200 [exp]	44.47	1.0000
					Potri.005G243501 [exp]	51.38	0.8957
					Potri.001G169351 [exp]	52.76	1.0000
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	53.60	0.9208
					Potri.001G196900 [exp]	54.55	1.0000
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.005G111800 [exp]	55.92	1.0000

Compare expression of checked genes

Potri.017G078400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.