Plant FIBer expression Database

HMGB906,ATHMG.1 (Potri.017G078500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol HMGB906,ATHMG.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28730 836 / 0 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
AT4G11080 45 / 0.0001 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
AT4G23800 45 / 0.0001 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G124000
[exp]
1081 / 0 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Potri.003G138000
[exp]
43 / 0.0005 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Potri.001G093700
[exp]
42 / 0.0009 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018073
[exp]
766 / 0 AT3G28730 850 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Lus10042065
[exp]
754 / 0 AT3G28730 843 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Lus10023090
[exp]
47 / 2e-05 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Lus10033951
[exp]
46 / 8e-05 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Lus10032379
[exp]
45 / 0.0002 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Lus10001909
[exp]
43 / 0.0008 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0114 HMG-box PF00505 HMG_box HMG (high mobility group) box
CL0266 PH PF03531 SSrecog Structure-specific recognition protein (SSRP1)
CL0266 PH PF08512 Rtt106 Histone chaperone Rttp106-like
Representative CDS sequence
>Potri.017G078500.1 pacid=42813237 polypeptide=Potri.017G078500.1.p locus=Potri.017G078500 ID=Potri.017G078500.1.v4.1 annot-version=v4.1
ATGGCGGACGCTCATCTCTTTAATAATATCTCTCTCGGAGGTCGTGGAGGCACCAACCCTGGGCAGCTTAAGATATCTTCAGGGGGAATCCAATGGAAGA
AACAAGGGGGTGGTAAGGCTGTTGAAGTTGATAGAACTGATATTGTTGGAGTGACATGGATGAAGGTCCCAAGGACAAATCAACTCAGTGTTCTAATCAA
AGGTGGGCCCTGGTACAAGTTTACTGGATTTCGTGATCAGGACCTATCTACCTTGACCAATTTTTTCCAAAGCCATGGAATAACACCAGAAGAGAAGCAG
CTTTCAGTCAGTGGCCGTAACTGGGGAGAAGTGGACTTAAATGGAAATATGCTTACATTTTTGGTTGGATCGAAGCAAGCTTTTGAGGTATCTTTGGCAG
ATGTTTCACAAACACAAATGCAAGGGAAAAATGATGTCATCTTGGAGTTCCATGTGGATGATACTACTGGAGCAAATGAGAAAGATTCATTGATGGAGCT
AAGTTTTCACATACCTAATAACAATACGCAATATATTGGTGATGAAAATCATCCTCCTGCTCAGGTTTTCCGTGACCTAATTGTGCAAAGGGCAGATGTC
GGTGCTGGAGGTGAAGAAGCTGTTGTTACATTTGAGGGTATCGCAATCCTCACACCAAGGGGTCGGTACAGTGTTGAACTGCATTTGTCTTTCTTGCGGC
TCCAAGGACAGGCTAATGATTTCAAAATTCAGTACAGCAGCGTTGTCCGCCTCTTTTTGCTTCCAAAGTTTAACCAGCCACACACCTTTGTTGTTGTGAC
TCTTGATCCACCAATCCGCAAAGGGCAAACTCTGTATCCACATATCGTGTTGCAGTTCGACACTGACTTTGTAGTTCAAAGCAACTTGTCAATGAGTGAA
GATCTTTTGTACACAAAGTACAAGGACAAGTTGGAACCATCCTATAAGGGGCTTATTCATGAAGTGTTCACCACTGTAATGCGTGGATTGTCTGCTGCCA
AAGTTACTAGACCAGGAAAATTCCGTAGTTGTCAAGATGGTTATGCTGTGAAATCATCATTGAAAGCTGAAGATGGAGTCCTGTACCCACTCGAAAAGAG
CTTCTTCTTCTTACCCAAACCCCCAACACTCATTCTTCATGAGGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCTGGTGGCTCAAATATGCATTAC
TTTGATCTTCTTATAAGACTTAAAACAGAACAAGAGCATCTTTTTCGGAACATCCAGAGGAACGAATATCATAATCTTTTTGACTTCATAAGTGGGAAGG
GCTTGAAAATTATGAACCTGGGAGATATGCAAACCACAAAAGGAGTGGCTGCTGTTCTTCAGAATGATGATGATGATGCTGTTGATCCACATCTTGCACG
CATTAGGAATGAAGCTGGTGATGATGAGAGTGATGACGAGGATGAAGATTTTGTTGCTGGGAAGGATGATGGAGGTTCTCCTACAGATGACTCTGGAGAT
GGAGAATCTGATGCCAGTGAAAGTGGTGATGAGAAAGAGAACCCGACAAAAAAGGATTTTAAAAGGGAGGCTTCATCTTCTAAGGCAACTACGAAGAGGA
AAAGCAGAGATGGAGAGGAAAGCCAAAAGAAGAGAAAACCGAAAAAGAAGAAGGATCCTAATGCACCGAAGAGGTCGAAATCAGCTTACATGTTCTTCTC
GCAAATGGAAAGGGAGAATGTGAGGAAGAGTAACCCAGGAATTGTGTTCGGGGAGATTGCAAAAGCACTTGCAGACAAGTGGAATGCTATGTCAGCGGAG
GAGAAGGAACCGTACGAAGAAATGGCTCGAAATGATAAAAAGCGGTATAAATTACAAGTCAATGACTACAAGAACCCACAACCAATGATGGTAGACTCTG
AAAACGAGTCTGACAGTTGA
AA sequence
>Potri.017G078500.1 pacid=42813237 polypeptide=Potri.017G078500.1.p locus=Potri.017G078500 ID=Potri.017G078500.1.v4.1 annot-version=v4.1
MADAHLFNNISLGGRGGTNPGQLKISSGGIQWKKQGGGKAVEVDRTDIVGVTWMKVPRTNQLSVLIKGGPWYKFTGFRDQDLSTLTNFFQSHGITPEEKQ
LSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMELSFHIPNNNTQYIGDENHPPAQVFRDLIVQRADV
GAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKFNQPHTFVVVTLDPPIRKGQTLYPHIVLQFDTDFVVQSNLSMSE
DLLYTKYKDKLEPSYKGLIHEVFTTVMRGLSAAKVTRPGKFRSCQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHY
FDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMQTTKGVAAVLQNDDDDAVDPHLARIRNEAGDDESDDEDEDFVAGKDDGGSPTDDSGD
GESDASESGDEKENPTKKDFKREASSSKATTKRKSRDGEESQKKRKPKKKKDPNAPKRSKSAYMFFSQMERENVRKSNPGIVFGEIAKALADKWNAMSAE
EKEPYEEMARNDKKRYKLQVNDYKNPQPMMVDSENESDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G28730 NFD, SSRP1, ATH... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.017G078500
[exp]
0 1 HMGB906,ATHMG.1
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
1.00 0.9457
AT2G13290 beta-1,4-N-acetylglucosaminylt... Potri.018G127900
[exp]
1.41 0.9327
AT5G07900 Mitochondrial transcription te... Potri.011G005100
[exp]
2.82 0.9124
AT4G01810 Sec23/Sec24 protein transport ... Potri.002G187100
[exp]
3.00 0.9257
AT1G52080 AR791 actin binding protein family (... Potri.003G047200
[exp]
3.46 0.9147
AT4G29790 unknown protein Potri.006G146700
[exp]
3.46 0.9072
Potri.010G007250
[exp]
3.87 0.9020
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
3.87 0.9196
AT5G64430 Octicosapeptide/Phox/Bem1p fam... Potri.001G285800
[exp]
4.47 0.9110
AT4G20325 unknown protein Potri.006G280600
[exp]
4.89 0.9206

Potri.017G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.