Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GN.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13980 2177 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 1677 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 815 / 0 GNL2 GNOM-like 2 (.1) AT1G01960 278 / 1e-75 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 265 / 2e-71 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 217 / 1e-56 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 208 / 5e-54 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 191 / 8e-49 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078900 [exp] 2439 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 960 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.014G070600 [exp] 287 / 1e-78 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 259 / 1e-69 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 258 / 3e-69 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 213 / 3e-55 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 186 / 4e-47 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.013G035100 [exp] 48 / 6e-05 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026627 [exp] 2188 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 2175 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 2110 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 2102 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10034615 [exp] 761 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10021771 [exp] 729 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10009300 [exp] 290 / 2e-79 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 238 / 4e-63 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 219 / 3e-57 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 209 / 5e-54 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [poplar] [flax] Sec7 Sec7 domain PF12783 [poplar] [flax] Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G078800.1 pacid=42814198 polypeptide=Potri.017G078800.1.p locus=Potri.017G078800 ID=Potri.017G078800.1.v4.1 annot-version=v4.1 ATGGGGAGAATAAAGCTACAGTCTGGAATTAAGGTGATTGAGGAAGAACCTGAGGAGTGCGGTACTTCTGAATCTTACAGAGCTACTATAGTATGCATGA TTAATGCAGAAGCAGGTACTGTGTTGGCAGTGATGAGGAGAAATGTGAGATGGGGGGTTCATTATATGTCAGGTGATGACCAACTAGAAGACTCTCTAAT TCAATCTTTGAAGACGTTGAGGAAGCAAATCTTCTCCTGGCAGAATCCATGGCATACCATCAACCCTGCACTTTATCTTCAGCCCTTTTTGGATGTGATT CGATCTGATGAAACAGGTGCACCAATCACTGGGGTTGCTTTGTTGTCTGTTTACAAGATATTAACTCTTGATGTGATTGATGAAAATACTGTAAATGTTG AAGATGCTATGCAGTCAGTGGTTGATGCTGTCACTGGTTGTCGGTTTGAGGTGACAGATCCTGCATCAGAAGAAGTGGTATTGATGAGGATACTTCAAGT TCTTCTGGCTTGCATGAAGAGTAAAGCATCAGTCATGTTAAGTAATCAGCATGTTTGTATCCTAGTGAACACTTGTTTTCGTATAGTACATCAAGCAGGC AGTAAAAGTGAGTTGCTGCAGAGGATTTCTCGCCACACTATGCATGAACTTATCAGGTTCATTTTTTCACACCTTCCAGATGTTGAAAACACAAACCAGG CATTGGTAGATGGTGTTGCTACTGTCAAACAGGAGAGTGGGGGGCTGGGTAATGATTATGCTCTTGGGAGTACACAGATGGAGAATGGCAATTGTAATTC AGAATTGGGTGGTCAGGCATCCTCTGTGAGGTTTGGTTCCGATGCTTCCACAGGTCTTGCCGCAATTGAAGAAAATGCAATTGAAGAAAATGCAATTGGG GCTGGTAGGGGAAAGGATGCCCTTCCTTTTGATTTGCACCTCATGACATTGCCATATGGAGTGCCTTGCATGGTGGAGATATTTCATTTCTTGTGTTCCT TATTAAATGTTGCTGAGCATATTGGAAAAGGTCCCAGGTCAAATACTATAGCATTTTATGAAGATGTCCCACTTTTTGCATTGGGCTTAATTAATTCAGC AATAGAATTGGGTGGCCCTTCAATTCACTGTCAACCTAGGCTACTGAGCTTGATTCAGGATGAATTATTTAGTAATCTGATGCAATTTGATTTATCAACG AGTCCACTTATTCTCTCAATGGTCTGTAGTATAGCTCTTAACCTGTATCACCATCTGCGAACTGAACTAAAACTCCAACTCGAGGCTTTCTTCTCTTTTG TAATTTTGAGACTTGCACAGAGCAGATATGGTGCTTCTTACCAGCAGCAAGAGGTTGCCATGGAGGCTCTTGTAGACTTCTGCAGGCAGAAAACCTTTAT GGTGGAGATGTATGCCAACTTGGATTGTGACATGACATGCAATAATGTGTTTGAAGACCTTATTAACTTGTTATCAAAGAGTGCCATTCCCATGGACTGT CCTTTGTCTTCCATGCACGTTCTTGCTCTGGATGGCCTTATTGCTGTTATTCAGGGTATAGTTGGAAGGATAGGCAATGGGTCTGATGGTTCAGAACCGG CCCCGGTGAATATTGATGAGTATACTTCCTTCTGGACAGCGAAGTGTGACAGCTATAGTGATCCTAACCAATGGGTACCGTTTATCCGCCAGAGGAAGCA CATTAAGAGAAGGTTAATGGTCGGAGCTGATCACTTCAATCGTGATCCAAAAAAAGGACTAGAGTTTCTCCAAGGAACACATCTACTGCCGGAAAAACTT AATCCTCAAAGTGTGGCTTGCTTTCTCAGGTACACTTCTGGATTAGATAAGAATCTTATTGGGGATTTCCTGGGAAGTCATGACGAGTTTTCCATTCAGG TTCTTCATGAGTTTGCTCAGACTTTTGATTTCGAAGATATGAGTCTGGATAATGCTTTGCGATTATTGTTGGAAACTTTTAGGCTGCCTGGAGAATCACA AAAAATACAAAGAGTGCTTGAGGCATTTTCTGAGAGATATTATGAGCAATCACCACAGGTTCTAGCTAACAAGGACGCAGCTCTTTTGTTGTCTTATTCT CTTATATTGCTCAACACAGATCGGCATAATGCACAGGTGAAGAAAAAAATGACAGAAGAGGATTTTATCCGGAATAATAGACGCATCAATGGAGGCAATG ACTTACCTCGAGAATTCTTGTCAGAGCTGTACCATTCAATTTGCAAGAATGAGATCCGCACAACTCCGGAACAAGGATTTGGAATCCCTGAAATGACCCC AAGCCGTTGGATTGATCTAATGCATAAGTCCAAAAGGACTGCTCCATTTATTTTATCCGATTCTAGAGCCGACCTTGACCATGATATGTTTGCTATAATG TCTGGTCCCACAGTTGATGCTATCTCTGTGGTGTTTGATCATGCTGAACTTGAAGATATTTACCAGACATGTATTGATGGATATCTGGCTCTTGCTAAAA TCTCTGCATGCCATCATCTTGTAGATGTATTGGATGCTGTAGTTGTGTCTCTGTGCAAATTCACAACCCTCTTGAATCCATCATCAGTCGAGGAATCTGT GCTAGCCTTTGGTGATGATGCAAGAGCAATGATGGCAACTGTCACAGTTTTTACCATTGCAAATAGATATGGTGACTATATCCGCACAGGTTGGAGAAAT ATTCTGGATTGTGTCCTTAGATTGTACAAACTTGGTCTCCTCCCTGCACGTGTGGCCAGTGATGCTACTGAGGAATCAGAGCTTTCTGCTGACCCTGTGC ATGGTAAAACAATTTCAAATTCTCTGCCTTCAGTTCACATGCAATCCATGGAAACTCCAAGAAGATATACTGGCTTAATGGGCCGGTTCAGTCAGTTTTT AGCTCTTGACATTGAGGAGCCAAGATCACAACCCACTGAACAACTTGCTGCTCATCAACGCACCCTTCAGACAATCCAAGAGTGCCATGTTGGCAGCATC TTTACTGAAAGCAAGTTCTTGCAAGCTGAATCATTATGGGAGCTTGCACAAGCACTTATCTTGGCTGCTGGTCACCCTCAGAAAGGGAACAGTTTACCAG AGGATGAAGATACTGCAGTTATTTGCCTGGAGTTGCTCATTACAATTACGCTGAATAACCGGGACAGGATTTTGCTATTGTGGCAGGGTGTTTATGAGCA CATAGCTAATATTGTTCAGTCAACTGTAATGCCTTGCTCCTTAGTAGAGAAGGCTGTTTTTGGACTCCTCCGGATTTGCCAGCGGCTGCTGCCCTACAAG GAGAACCTGGCTGATGAACTTTTGAGGTCACTGCAACTTGTCTTGAAGCTTGATGCCCGTGTTGCTGATGCATACTGTGAACAAATTACTCAGGAAGTGG GTCGCCTTGTGAAAGCAAATGCTGCACACATAAGATCTCTAATGGGGTGGCGTACGATTACATCCTTGCTTTCCATCACTGCTCGGCATCCAGATGCTGC TGAAGCAGGATTCGATGCATTGTTCTTTATCATGTGTGATGGGTCTCATTTGTTACCTGCAAATTATGTTCTCTGTGTTGATGCAGCAAGGCAGTTTGCA GAGTCTCGTGTGGGACAGGCAGAGAGGTCCGTGTGTGCAGTTGATCTTATGGGAGATTCTGTTAGTTGTTTGGTTAGGTGGTCGCAAGATGCAAAGGAGG CAATGGGGGAGGAGGAGTCTGCAAAGTTATCAGAGGATATTGGGGAAATGTGGCTGAGGCTTGTGCAGGGTTTACGGAAAGTTTGTTTGGATCAGAGAGA AGAGGTCAGAAACCGTTCTCTTTTATCATTGCAGAAGTGCTTGACAGGAGTGGATGGGATCAAACTTCCACATGATCTTTGGTTACAGTGTTTTGATCTG GTCATCTTCACCATGTTAGATGATTTGCATGAAATTGCTCAGGGGCACCAATCTAACTATAGAAACATGGAAGGGACACTTGTCATTGCTGTAAAACTCC TTTCAAAAGTGTTTTTGCAGTTACTCCCTGAAATTGCACAGTTGACAACTTTCTGCAAACTCTGGGTGGGAGTGCTTAGCCGAATGGAAAAATATCTGAA GGTAAAAGTAAAAGGGAAGAAAAATGAAATTCTTCAGGAAACAGTGCCTGAGCTTCTGAAGAACACCTTGCTGGTAATGAAGAGCTGGGGAGTGCTTGTG CAGAGGAGTGCTTCAGGTGGGGATAGCTTGTGGGAACTTACATGGGTGCATGTGAATAGTATTGCTCCATCTTTGCAAGCTGAGGTGTTCCCTGATCAAG GTCAGGAGCAGTCACTTCATAAGCTGGACGAAACAGGTTGCGTTCCTTCAAATGAACCAGTGCATGCTGAATGTGCTGCTGGCACTGGAGGTTAA
AA sequence Show only first row Show all	>Potri.017G078800.1 pacid=42814198 polypeptide=Potri.017G078800.1.p locus=Potri.017G078800 ID=Potri.017G078800.1.v4.1 annot-version=v4.1 MGRIKLQSGIKVIEEEPEECGTSESYRATIVCMINAEAGTVLAVMRRNVRWGVHYMSGDDQLEDSLIQSLKTLRKQIFSWQNPWHTINPALYLQPFLDVI RSDETGAPITGVALLSVYKILTLDVIDENTVNVEDAMQSVVDAVTGCRFEVTDPASEEVVLMRILQVLLACMKSKASVMLSNQHVCILVNTCFRIVHQAG SKSELLQRISRHTMHELIRFIFSHLPDVENTNQALVDGVATVKQESGGLGNDYALGSTQMENGNCNSELGGQASSVRFGSDASTGLAAIEENAIEENAIG AGRGKDALPFDLHLMTLPYGVPCMVEIFHFLCSLLNVAEHIGKGPRSNTIAFYEDVPLFALGLINSAIELGGPSIHCQPRLLSLIQDELFSNLMQFDLST SPLILSMVCSIALNLYHHLRTELKLQLEAFFSFVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDMTCNNVFEDLINLLSKSAIPMDC PLSSMHVLALDGLIAVIQGIVGRIGNGSDGSEPAPVNIDEYTSFWTAKCDSYSDPNQWVPFIRQRKHIKRRLMVGADHFNRDPKKGLEFLQGTHLLPEKL NPQSVACFLRYTSGLDKNLIGDFLGSHDEFSIQVLHEFAQTFDFEDMSLDNALRLLLETFRLPGESQKIQRVLEAFSERYYEQSPQVLANKDAALLLSYS LILLNTDRHNAQVKKKMTEEDFIRNNRRINGGNDLPREFLSELYHSICKNEIRTTPEQGFGIPEMTPSRWIDLMHKSKRTAPFILSDSRADLDHDMFAIM SGPTVDAISVVFDHAELEDIYQTCIDGYLALAKISACHHLVDVLDAVVVSLCKFTTLLNPSSVEESVLAFGDDARAMMATVTVFTIANRYGDYIRTGWRN ILDCVLRLYKLGLLPARVASDATEESELSADPVHGKTISNSLPSVHMQSMETPRRYTGLMGRFSQFLALDIEEPRSQPTEQLAAHQRTLQTIQECHVGSI FTESKFLQAESLWELAQALILAAGHPQKGNSLPEDEDTAVICLELLITITLNNRDRILLLWQGVYEHIANIVQSTVMPCSLVEKAVFGLLRICQRLLPYK ENLADELLRSLQLVLKLDARVADAYCEQITQEVGRLVKANAAHIRSLMGWRTITSLLSITARHPDAAEAGFDALFFIMCDGSHLLPANYVLCVDAARQFA ESRVGQAERSVCAVDLMGDSVSCLVRWSQDAKEAMGEEESAKLSEDIGEMWLRLVQGLRKVCLDQREEVRNRSLLSLQKCLTGVDGIKLPHDLWLQCFDL VIFTMLDDLHEIAQGHQSNYRNMEGTLVIAVKLLSKVFLQLLPEIAQLTTFCKLWVGVLSRMEKYLKVKVKGKKNEILQETVPELLKNTLLVMKSWGVLV QRSASGGDSLWELTWVHVNSIAPSLQAEVFPDQGQEQSLHKLDETGCVPSNEPVHAECAAGTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	0	1	GN.2
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	4.47	0.7598
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	4.89	0.7947
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	5.91	0.7279
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	6.00	0.7445
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	6.48	0.7171
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	8.00	0.7342
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	8.83	0.6752
AT1G03080			kinase interacting (KIP1-like)...		Potri.005G213400 [exp]	13.41	0.6911
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	16.00	0.7134
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	17.43	0.6948

Compare expression of checked genes

Potri.017G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.