Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GN.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13980 2418 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 1781 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 1046 / 0 GNL2 GNOM-like 2 (.1) AT1G01960 277 / 3e-75 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 270 / 5e-73 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 260 / 5e-70 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 251 / 5e-67 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 208 / 5e-54 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078800 [exp] 2459 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 952 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.004G208400 [exp] 301 / 6e-83 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 297 / 1e-81 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 289 / 5e-79 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 256 / 1e-68 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 209 / 4e-54 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026627 [exp] 2431 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 2416 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 2316 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 2311 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10034615 [exp] 840 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10021771 [exp] 804 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10009300 [exp] 335 / 2e-93 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 277 / 3e-75 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 247 / 6e-66 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 244 / 6e-65 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [poplar] [flax] Sec7 Sec7 domain PF12783 [poplar] [flax] Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G078900.2 pacid=42813823 polypeptide=Potri.017G078900.2.p locus=Potri.017G078900 ID=Potri.017G078900.2.v4.1 annot-version=v4.1 ATGCTTCAGTCAAGCACTTGCAACATTTGGTTACATTGTACGGAAATGGGGAGATTAAAGCTAAACACTGGGATTAAGTCAATTGAGGAAGAGCCTGAGG AGCGTGATGCTGCTGTTGAATCAAATAGGGCTGATTTATTAGCATATTCGATTAATTCTGAAGTCAGTGCCGTGTTGGCGGTCATGAGGAGAAACGTGAG ATGGGGGGGTCGGTATATTTCAGGCGATGACCAGCTAGAAGACTCTCTAATTCAATCTTTGAAGACGTTGAGGAAGCAAATCTTCTCATGGCAGAATCCG TGGCATACTATCAACCCTGCTCTTTATCTTCAGCCCTTTTTGGATGTCATTCGGTCCGATGAAACGGGTGCACCAATCACCGGGGTTGCTTTGTTGTCTG TTTACAAGATATTAACTCTTGATGTGATTGATGAAAATACTGTAAATGTTGAAGATGCTATGCAGCTGGTAGTTGATGCTGTGACTAGTTGCCGGTTTGA GGTGACAGATCCTTCATCTGAAGAAATGGTGTTGATGAAGATACTTCAGGTTCTTCTGGCTTGCATGAAGAGTAAGGCATCTGTCATGTTGAGTAATCAA CATGTTTGTACCATAGTGAACACTTGTTTTCGTATAGTACATCAAGCAGGCAGTAAAAGCGAGTTGCTGCAGAGGATTTCTCGCCACACTATGCATGAAC TTGTCAAGTGCATTTTTTCACACCTTCCAGATGTTGAAAGCGCTGAACAGACATTGGTTAATGGAGTTACTTCTCACAAACATGAGATTGGTGGGCTGGA TAATGATTATGCTTTTGGGAGTAAACAGATGGAGAATGGAAATGGTAATTCAGAATTGGATGGCCAAGCATCCACTGTGAGCTTTGGTTCCAATGCTTCC ACAGCTCTGGTGGCAAGGGAAGAAAATGCAATTGGGACTGGTGGTGGAAAGGATGGCCTTCCATTTGATTTGCACCTTATGACAGAACCATATGGAGTGC CTTGCATGGTGGAGATATTTCATTTCTTGTGCTCTTTATTAAATGTTGTTGAGCATATTGGAATGGGTCCCAGATCAAATACTATAGCATTTGATGAAGA TGTCCCACTTTTTGCTTTGGGTTTAATTAATTCTGCAATAGAATTGGGCGGCCCTTCTATTCGTTGTCACCCGAGGTTACTGAGTTTGATTCAGGATGAA TTATTTCGTAATCTGATGCAATTTGGTTTGTCAGTGAGTCCGCTTATTCTCTCAATGGTCTGTAGTATAGTTCTCAATCTGTATCACCATCTCCGAACTG AACTAAAACTCCAGCTCGAGGCTTTCTTCTCATGTGTGATTTTGAGACTTGCGCAGAGCAGATATGGTGCTTCATACCAGCAGCAAGAGGTTGCCATGGA GGCTCTTGTAGACTTCTGCAGGCAGAAAACCTTTATGGTGGAGATGTATGCCAATTTAGATTGTGACATAACATGCAGTAACGTGTTTGAAGAGCTTGCT AATTTATTGTCAAAGAGTGCTTTTCCAGTGAATTGCCCTTTGTCTGCAATGCACATTCTTGCTCTTGATGGCCTTATTGCTGTTATTCAGGGGATGGCTG AAAGGATAGGCAATGGATCGGTAAGTTCAGAGCAGGGACCAGTGAATCTTGAGGAGTACACCCCGTTCTGGATGGTGAAGTGTGACAACTATAGTGATCC TAATCATTGGGTTCCATTTGTCCGCAGGAGGAAGTACATTAAGAGAAGGTTGATGATCGGAGCTGATCACTTTAATCGTGACCCAAAGAAAGGACTAGAA TTTCTCCAAGGAACACATCTCTTACCTGACAAACTGGACCCTCAAAGTGTGGCTTGCTTTTTCAGGTACACTGCTGGGTTAGATAAGAATCTTGTTGGTG ATTTCTTGGGAAATCATGATGAGTTTTGCGTTCAGGTTCTCCATGAATTTGCTTGGACTTTTGATTTCCAAGACATGAATCTTGATACTGCTTTGCGGTT GTTCTTGGAAACTTTTAGACTGCCTGGAGAATCACAAAAAATACAAAGGGTGCTTGAGGCATTTTCTGAGAGATATTATGAGCAATCACCACAGATTCTT GCTAACAAGGATGCAGCTCTTTTGCTGTCTTATTCCCTTATAATGCTCAACACAGATCAGCACAATGTACAGGTGAAGAAAAAAATGACGGAAGAGGACT TCATCCGGAATAATAGGCACATCAATGGAGGCAATGACTTACCTCGAGAATTTCTTACGGAGCTTTACCATTCAATTTGCAAAAATGAGATCCGCACAAC TCCTGAACAAGGATTTGGTTACCCTGAAATGACCCCAAGCCGTTGGATTGATCTAATGCACAAGTCCAAAAAGACTGCTCCGTTCATTTTATCTGATTCC AGAGCCTACCTTGACCATGATATGTTTGCCATAATGTCAGGTCCAACAATTGCTGCTATCTCTGTGGTGTTTGATAATGCAGAACATGAAGATGTTTACC AGACATGTATTGATGGATTCCTGGCTGTTGCTAAAATCTCCGCATGCCATCATCTTGAAGATGTGTTGGATGATCTAGTTGTGTCTCTGTGCAAGTTCAC AACCCTCCTGAATCAATCTTCAGTTGAGGAACCGGTGCTAGCCTTTGGTGATGATGCAAAAGCAAGGATGGCAACTGTTACAGTTTTTACCATTGCAAAT AGGTATGGTGATTACATTCGCACAGGATGGAGGAATATCCTGGACTGCATCTTGCGATTGCACAAACTTGGTCTCCTCCCTGCTCGTGTGGCCAGTGATG CTGCTGATGAATCAGAGCTAGCTGCTGACCCTGTGCATGGTAAACCTATTACAAATTCTCTGTCATCAGTTCACATGCAATCCATGGGAACTCCAAGGAG ATCTTCTGGATTAATGGGCCGATTCAGTCAGCTCTTGTCTCTCGACACTGAGGAGCCAAGATCGCAACCCACTGAACAACAACTTGCTGCTCATCAACGC ACCCTTCAGACAATCCAAAAGTGCCATGTTGACAGCATATTTACTGAGAGCAAGTTCTTGCAAGCTGAATCGTTGTTGCAGCTAGCACGAGCACTCATCT GGGCTGCAGGTCGCCCTCAGAAAGGGAACAGTTCACCAGAGGATGAAGATACTGCTGTTTTCTGCCTTGAATTGCTCATTGCAATTACACTGAGCAACAG GGACAGGATTGTGCTATTGTGGCAGGGTGTTTATGAGCACATAGCTAATATTGTTCAATCAACTGTAATGCCTTGTGCCTTAGTAGAGAAGGCTGTTTTT GGACTCCTCAGGATTTGCCAGCGGCTGCTGCCCTACAAAGAGAACCTGGCTGATGAACTTTTGAGGTCACTGCAACTTGTCTTGAAGCTTGATGCCCGTG TTGCTGATGCATACTGTGAACAAATTACACAGGAAGTGACTCGGCTTGTGAAAGCAAATGCTACACACATCAGATCCCTAATGGGTTGGCGTACGATTAC ATCCTTGCTTTCCATCACTGCTCGTCACCCAGAAGCTTCTGAAGCAGGATTCGATGCGCTGTTGTTCATTATGACTGATGAAGCTCATTTGTTGCCTGCC AATTATGTTCTCTGTGTTGATGCAGCAAGGCAGTTTTCAGAGTCTCGTGTTGGACAGGCAGAGAGATCTGTGCGAGCACTTGAACTTATGGCAGGTTCTG TTAATTGTTTGGCTAGGTGGTCGCATGATGCAAAGGAAACAATGGGAGAAGAGGAGTCTGCAAAATTATCACAGGATATTGGGGAAATGTGGCTGAGGCT TGTGCAAGGTTTACGGAAAGTTTGTTTGGATCAGAGAGAAGAGGTCAGAAACCATGCTCTTTTATCATTGCAAAAGTGCTTGACAGGAGTGGATGAGATT AACCTTCCACATGGTCTGTGGTTACAATGTTTTGATCTGGTGATCTTTACTATGCTAGATGACTTGCTTGAAATTGCTCAGGGACACCAAAAAGACTACC GGAATATGGAAGGGACACTTATCATTGCTGTAAAACTCCTGTCAAAGGTGTTTTTACAGTTACTTAATGAACTTGCACAGCTGACAACTTTCTGCAAGCT ATGGCTAGGAGTGCTTAGCCGAATGGAAAAATATCTTAAGGTAAAAGTGAAAGGGAAGAAGAATGAAAATCTCCAGGAAACGGTGCCTGAGCTTCTTAAG AACACTTTACTTGCAATGAAGAGTAGGGGAGTGCTTATGCAGAGGAGTGCTCTAGGTGGGGATAGCTTGTGGGAACTTACATGGCTGCATGTGAATAACA TTGCTCCATCTTTGCAAGCTGAGGTGTTCCCTGACCAAGATCGAGAGCAGTCACATCATAAGCTGGGTGAAACTGGTGGAAGTTTGGTGTCTGATGAAAC AGATTCTGTTTCTTCCAAGGAATCAGTGCATGCTGAAGTTGCTGGCACAGGAGGTTAA
AA sequence Show only first row Show all	>Potri.017G078900.2 pacid=42813823 polypeptide=Potri.017G078900.2.p locus=Potri.017G078900 ID=Potri.017G078900.2.v4.1 annot-version=v4.1 MLQSSTCNIWLHCTEMGRLKLNTGIKSIEEEPEERDAAVESNRADLLAYSINSEVSAVLAVMRRNVRWGGRYISGDDQLEDSLIQSLKTLRKQIFSWQNP WHTINPALYLQPFLDVIRSDETGAPITGVALLSVYKILTLDVIDENTVNVEDAMQLVVDAVTSCRFEVTDPSSEEMVLMKILQVLLACMKSKASVMLSNQ HVCTIVNTCFRIVHQAGSKSELLQRISRHTMHELVKCIFSHLPDVESAEQTLVNGVTSHKHEIGGLDNDYAFGSKQMENGNGNSELDGQASTVSFGSNAS TALVAREENAIGTGGGKDGLPFDLHLMTEPYGVPCMVEIFHFLCSLLNVVEHIGMGPRSNTIAFDEDVPLFALGLINSAIELGGPSIRCHPRLLSLIQDE LFRNLMQFGLSVSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEELA NLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNGSVSSEQGPVNLEEYTPFWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLE FLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAWTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQIL ANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLTELYHSICKNEIRTTPEQGFGYPEMTPSRWIDLMHKSKKTAPFILSDS RAYLDHDMFAIMSGPTIAAISVVFDNAEHEDVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNQSSVEEPVLAFGDDAKARMATVTVFTIAN RYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELAADPVHGKPITNSLSSVHMQSMGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQR TLQTIQKCHVDSIFTESKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLSNRDRIVLLWQGVYEHIANIVQSTVMPCALVEKAVF GLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVTRLVKANATHIRSLMGWRTITSLLSITARHPEASEAGFDALLFIMTDEAHLLPA NYVLCVDAARQFSESRVGQAERSVRALELMAGSVNCLARWSHDAKETMGEEESAKLSQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCLTGVDEI NLPHGLWLQCFDLVIFTMLDDLLEIAQGHQKDYRNMEGTLIIAVKLLSKVFLQLLNELAQLTTFCKLWLGVLSRMEKYLKVKVKGKKNENLQETVPELLK NTLLAMKSRGVLMQRSALGGDSLWELTWLHVNNIAPSLQAEVFPDQDREQSHHKLGETGGSLVSDETDSVSSKESVHAEVAGTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078900 [exp]	0	1	GN.1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	5.29	0.8471
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	10.09	0.8299
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	11.31	0.8352
					Potri.010G122150 [exp]	12.96	0.8240
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	19.62	0.8231
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	27.69	0.7996
AT4G13970			zinc ion binding (.1)		Potri.002G140800 [exp]	29.74	0.7959
AT5G20610			unknown protein		Potri.006G145500 [exp]	29.84	0.8013
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	30.28	0.8065
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	30.98	0.8003

Compare expression of checked genes

Potri.017G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.