Plant FIBer expression Database

Potri.017G079000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07730 40 / 0.0006 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G079000.1 pacid=42812818 polypeptide=Potri.017G079000.1.p locus=Potri.017G079000 ID=Potri.017G079000.1.v4.1 annot-version=v4.1
ATGGAAGGTGACAATGAATGGGAACAAATCCAATGCCCAACAAATCAATTAAGAGAATGGGAAATGGTTGCTCTTGGAGACAACAAGAACCATCTTCAGG
CTGACCCCTGTATCTTCCCTCCAAGCAACCATGAAGGCCTTCAAATCCCACAACCACCACCGGAGTCACAAACTATTCCTGGCCAACCATGTTCAAGTGC
TGTATGTAATGTGAAAGCTGAGAAAATAGCCGGGTCTGACTCCATGGCGCCACAAGTGGAGCGCAATAGAATTGGGAAGCTTTTGAGGTCCGGGGGATTT
TGGATAGCAAGCAGAGTTCATTATTATGTGATTTACAGAGGTGGGTTTCGCTCAATTGCATCGCTTACTGTATTGGTAGCAGCAGTTTCGCTATTCTCCA
GGTTCCGAAGGTGGAGTAAATGGATCCAGGAAGAGAGAAAGAATCATCTCATCCTTCGTCTCAAAGAGAAAGACCAGACTATTAGCCAGCTCTCGCTCCA
AATTGCACAAATGAAAGAAATGTTATTGTCGCGTCGCAAGGTTGCAGTCATCCGAGTTGGTTGA
AA sequence
>Potri.017G079000.1 pacid=42812818 polypeptide=Potri.017G079000.1.p locus=Potri.017G079000 ID=Potri.017G079000.1.v4.1 annot-version=v4.1
MEGDNEWEQIQCPTNQLREWEMVALGDNKNHLQADPCIFPPSNHEGLQIPQPPPESQTIPGQPCSSAVCNVKAEKIAGSDSMAPQVERNRIGKLLRSGGF
WIASRVHYYVIYRGGFRSIASLTVLVAAVSLFSRFRRWSKWIQEERKNHLILRLKEKDQTISQLSLQIAQMKEMLLSRRKVAVIRVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G079000
[exp]
0 1
AT5G05280 RING/U-box superfamily protein... Potri.019G130100
[exp]
1.41 0.9697
AT5G54770 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4,... Potri.011G025200
[exp]
3.46 0.9556
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Potri.014G141500
[exp]
3.46 0.9556 Pt-ACD32.1
AT5G02860 Pentatricopeptide repeat (PPR)... Potri.001G297300
[exp]
6.32 0.9336
AT3G62550 Adenine nucleotide alpha hydro... Potri.014G122000
[exp]
6.63 0.9502
AT2G20540 MEF21 mitochondrial editing factor ... Potri.001G471600
[exp]
7.93 0.9257
AT5G23200 unknown protein Potri.005G092100
[exp]
9.79 0.8923
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.003G061600
[exp]
11.66 0.9147
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G007932
[exp]
12.00 0.9262
AT1G70820 phosphoglucomutase, putative /... Potri.008G131400
[exp]
12.68 0.9317

Potri.017G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.