Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25150 64 / 2e-10 TAF5 TBP-associated factor 5 (.1) AT1G11160 55 / 9e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 54 / 2e-07 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G15900 54 / 2e-07 PRL1 pleiotropic regulatory locus 1 (.1) AT5G23430 52 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 52 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 50 / 1e-06 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 50 / 4e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G53090 49 / 1e-05 SPA4 SPA1-related 4 (.1.2) AT3G21540 47 / 4e-05 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263400 [exp] 61 / 2e-09 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 59 / 4e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 56 / 4e-08 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.004G150700 [exp] 52 / 7e-07 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.013G079600 [exp] 51 / 1e-06 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G112184 [exp] 50 / 3e-06 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G255400 [exp] 50 / 4e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 50 / 4e-06 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G077800 [exp] 50 / 4e-06 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033021 [exp] 616 / 0 AT5G25150 55 / 1e-07 TBP-associated factor 5 (.1) Lus10015361 [exp] 162 / 1e-46 AT3G28715 120 / 2e-32 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10023563 [exp] 61 / 2e-09 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10024447 [exp] 60 / 3e-09 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10040449 [exp] 57 / 2e-08 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10007449 [exp] 57 / 2e-08 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10006511 [exp] 55 / 1e-07 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 54 / 2e-07 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10013452 [exp] 52 / 1e-06 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10038890 [exp] 50 / 2e-06 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.017G079100.1 pacid=42814092 polypeptide=Potri.017G079100.1.p locus=Potri.017G079100 ID=Potri.017G079100.1.v4.1 annot-version=v4.1 ATGGAAGCAGAGCCATCAAGCACAGCAACAACAACCAGGATTACGGATTTGAACGAGGACTCGCTGGCTCACTGTGCCACTTACTTGTCCCTTCAGGACC TCTCCAATTTAGCCACGACCTGCAAATCCCTCAAACGCGTTGCTTATTCTGATCCCATCTGGCAACACTGCTTCAGGGAGCATTGGCCACGCGAATTGTT ACAAACCTCAGGGTTGAGAGAGGCATATCTAAAACGACGTGTTGCGGTTCAGCAATTCAAGTTTGTCGATCCTTTGGTTGCTGACTTGTACATTACAGAT GCTAAACCTTTTGATCATATCATTTTGGACAAGAATGATATTACCTTTTCCCAGGGCTCCTTGGTACAAATGACAAATATTGATAGCTTTTTAAATGGAA GAGACGGTGTTACAGCGCTGAGTGATCATAATGCAAGAATCACTTGTATGAGATTGTTTCCCCTTAGTGAAACCTCTCTCTTTCGAAGTGAGACACAAAG GAAGGAAAATGTTTTGGTAACCTCAAGTTGCGACCATTCCATTCGTCTCTGGTGGAAGGGTTCTTGCCAACGGTGTTTTAGAGGTCATAACGGTCCTGTT TTGACCTTGTCTGATAAATTGTTAGGCGATGGTAGTGCCAAAGTACTGGCAAGCGGTGGGGAGGATGGTACAGTTCGACTTTGGTCCCTCAGTTCAAGTG GAAAGCGTGGCCAACATGCTTTAAAGGCTACACTTTACGGACATGAGAAGCCTATTAAATTGATGTCAGTTGCCGGGCACAGAACATCTCTTTTGGCAAC CATCTCAAAAGATTCCAAGGTTAGGGTTTGGGATACCACAACATCATCTGCTGTTCGTTCGTCATGCTGTGTCGGAATGACTTCTGTGCCGGGCGCACCT GTTGATGTGAAGTGCTGTGAATCATTGTTATATGTTGCTGCTGGTTCCTCTGTCGTAGCAATTGATTTGAGGACAATGCAAAAAGTTATCACTGTTGCTA TCTACCAACCAAAACTGTGTTCATTTGCCATTGTGCCTTCAAAGCCCTTGATCTGCACTGGTGGAATTGACAAAGCCAAGCTTTGGGATATAAGGATAAA CCAGGAGACTCTGAAACCAGAACCAGTAGCTGAGTTAGATGGGCACACCGGTCCAGTGACACTGTTGCACATGGATCCATACAAAATAGTTACAGGGGGG CCTGAGGATTCTTACATTAATGTTTGGGAGACTGACACTGGCGCACAAACAAATTCCTTTATTTGCTGTCCTTCTGATGCTGCAAGTAGCAGCTCTGGCA TGGGGTGTTCAGCCATGGCTGTGAATGGGACACGGATTGTCACTGCTAGCTATGGTGAAGAACATGGACTGGTATGCTTCAGGGACTTCTTCAATGCTAC CTGTGCTGTTTCAAAACGTGAAGATGTGCTTGCTTCCAAGTTTTGGGATCCACAATCTTATAGCGATGGTGATGCATATAGCTAG
AA sequence Show only first row Show all	>Potri.017G079100.1 pacid=42814092 polypeptide=Potri.017G079100.1.p locus=Potri.017G079100 ID=Potri.017G079100.1.v4.1 annot-version=v4.1 MEAEPSSTATTTRITDLNEDSLAHCATYLSLQDLSNLATTCKSLKRVAYSDPIWQHCFREHWPRELLQTSGLREAYLKRRVAVQQFKFVDPLVADLYITD AKPFDHIILDKNDITFSQGSLVQMTNIDSFLNGRDGVTALSDHNARITCMRLFPLSETSLFRSETQRKENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPV LTLSDKLLGDGSAKVLASGGEDGTVRLWSLSSSGKRGQHALKATLYGHEKPIKLMSVAGHRTSLLATISKDSKVRVWDTTTSSAVRSSCCVGMTSVPGAP VDVKCCESLLYVAAGSSVVAIDLRTMQKVITVAIYQPKLCSFAIVPSKPLICTGGIDKAKLWDIRINQETLKPEPVAELDGHTGPVTLLHMDPYKIVTGG PEDSYINVWETDTGAQTNSFICCPSDAASSSSGMGCSAMAVNGTRIVTASYGEEHGLVCFRDFFNATCAVSKREDVLASKFWDPQSYSDGDAYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	0	1
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	9.48	0.8789
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	17.32	0.8196
AT1G04780			Ankyrin repeat family protein ...		Potri.001G051400 [exp]	18.97	0.8283
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	18.97	0.8254
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	19.18	0.8316
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	22.18	0.7906
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	28.14	0.8396
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	28.70	0.8555
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	32.83	0.8492
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	37.30	0.8529	Pt-GLUR3.3

Compare expression of checked genes

Potri.017G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.