Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28715 691 / 0 ATPase, V0/A0 complex, subunit C/D (.1.2) AT3G28710 690 / 0 ATPase, V0/A0 complex, subunit C/D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030672 [exp] 707 / 0 AT3G28715 693 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10005252 [exp] 707 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10033022 [exp] 603 / 0 AT3G28715 590 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10015361 [exp] 122 / 5e-33 AT3G28715 120 / 2e-32 ATPase, V0/A0 complex, subunit C/D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01992 [poplar] [flax] vATP-synt_AC39 ATP synthase (C/AC39) subunit
Representative CDS sequence Show only first row Show all	>Potri.017G079200.1 pacid=42813602 polypeptide=Potri.017G079200.1.p locus=Potri.017G079200 ID=Potri.017G079200.1.v4.1 annot-version=v4.1 ATGTACGGATTCGAGGCCATGACATTCAACATCCATGGAGGGTACCTGGAAGCCATCGTGAGGGGACACAGATCAGGGCTTTTAACAGCATCTGATTACA ACAATCTCTGCCAGTGTGAAACCCTTGATGATATCAAGATGCATCTCTCTGCTACCGAGTACGGTCCCTATCTTCAAAACGAACCTTCTCCGTTGCATAC CATTACTATTGTGGAGAAATGCACTCTGAAATTAGTTGATGAGTACAAGCACATGCTAACCCAAGCCACAGAGCCCTTATCCACCTTCTTGGAGTATTGC ACATATGGTCACATGATAGACAATGTTGTCTTGATTGTAACCGGAACCTTGCATGAGAGAGATGTTCAGGAGCTATTGGAGAAGTGCCATCCTTTGGGCA TGTTTGACAGTATTGCCACCCTGGCTGTTGCTCAGAATATGCGAGAGCTTTACAGATTGGTGCTTGTTGACACACCCCTGGCACCATATTTCTCAGAGTG CATCACATCAGATGACTTGGATGACATGAATATTGAAATTATGAGGAATACCCTTTACAAGGCATATCTTGAGGATTTTTACAGGTTTTGTCAGAAACTT GGAGGTGCCACAGCTGAGATCATGTCTGACCTCCTCTCCTTTGAGGCTGACAGAAGGGCTGTCAATATCACCATAAATAGCATTGGCACTGAGCTGACCC GGGAGGATCGTAGGAAACTGTACTCGAATTTTGGCTTGCTTTACCCCTATGGACATGAGGAACTTGCTGTCTGTGAGGATTTGGATCAGGTTCGTGGTGT CATGGAAAAATATCCACCTTATCAGTCAATCTTTGCCAAGTTGTCGTATGGTGAGAGTCAGCTGCTTGACAAAGCATTTTATGAAGAAGAAGTGAAGAGG CTGTGCTTAGCTTTTGAGCAACAGTTCCATTATGCTGTCTTCTTTGCATACATAAGATTGAGGGAGCAGGAGATCAGGAATCTGATGTGGATATCTGAAT GTGTGGCTCAGAATCAGAAGTCTAGAGTTCATGACAGTGTTGTCTTCATATTTTAG
AA sequence Show only first row Show all	>Potri.017G079200.1 pacid=42813602 polypeptide=Potri.017G079200.1.p locus=Potri.017G079200 ID=Potri.017G079200.1.v4.1 annot-version=v4.1 MYGFEAMTFNIHGGYLEAIVRGHRSGLLTASDYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTITIVEKCTLKLVDEYKHMLTQATEPLSTFLEYC TYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSDDLDDMNIEIMRNTLYKAYLEDFYRFCQKL GGATAEIMSDLLSFEADRRAVNITINSIGTELTREDRRKLYSNFGLLYPYGHEELAVCEDLDQVRGVMEKYPPYQSIFAKLSYGESQLLDKAFYEEEVKR LCLAFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28715			ATPase, V0/A0 complex, subunit...		Potri.017G079200 [exp]	0	1
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	4.89	0.8436
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	6.92	0.8317	Pt-UBC4.2
AT2G21190			ER lumen protein retaining rec...		Potri.009G128900 [exp]	11.09	0.8715
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.014G049400 [exp]	11.44	0.8768	RAB1.2
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	11.95	0.7840	Pt-RAB1.5
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	13.96	0.8526
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.017G087700 [exp]	14.69	0.8716
AT5G55290			ATPase, V0 complex, subunit E ...		Potri.011G092600 [exp]	14.96	0.8389
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.008G197700 [exp]	16.97	0.8362
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	18.73	0.8394

Compare expression of checked genes

Potri.017G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.