Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74690 225 / 2e-66 IQD31 IQ-domain 31 (.1) AT1G18840 223 / 2e-65 IQD30 IQ-domain 30 (.1.2) AT2G02790 172 / 2e-46 IQD29 IQ-domain 29 (.1) AT1G14380 167 / 6e-45 IQD28 IQ-domain 28 (.1.2.3) AT1G19870 105 / 1e-23 IQD32 IQ-domain 32 (.1) AT1G72670 102 / 3e-23 IQD8 IQ-domain 8 (.1) AT3G52290 87 / 3e-18 IQD3 IQ-domain 3 (.1) AT3G09710 85 / 3e-17 IQD1 IQ-domain 1 (.1.2) AT4G14750 84 / 3e-17 IQD19 IQ-domain 19 (.1) AT5G13460 84 / 5e-17 IQD11 IQ-domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 325 / 3e-104 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.012G069900 [exp] 311 / 7e-99 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.002G025200 [exp] 112 / 6e-26 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.005G236200 [exp] 107 / 3e-24 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.006G226600 [exp] 101 / 1e-22 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 88 / 2e-19 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.003G042700 [exp] 86 / 1e-17 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.001G215200 [exp] 83 / 1e-16 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.016G086300 [exp] 82 / 2e-16 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004263 [exp] 285 / 1e-88 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10042173 [exp] 255 / 8e-77 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10030784 [exp] 180 / 1e-49 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10013261 [exp] 170 / 4e-46 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10033167 [exp] 98 / 5e-21 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10014870 [exp] 91 / 7e-19 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10006613 [exp] 87 / 9e-18 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10013362 [exp] 84 / 4e-17 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 83 / 9e-17 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10010104 [exp] 82 / 2e-16 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.017G079600.2 pacid=42812843 polypeptide=Potri.017G079600.2.p locus=Potri.017G079600 ID=Potri.017G079600.2.v4.1 annot-version=v4.1 ATGGGAAAATCGGCAGGAAATTGGATCAAGACTGTAATCTTTAGGAAGAAATCATATAAATCTAGCTTTTCAAATAGAGCTGCAGTGAAGGAGGCATTTG CTATTTCTAAAGGATCAACTGGTGACTTGACATTGAGTCCTCCTGTAATCTCAGATCCACTATCTCACGTGTCAGATAAAAATGATACAGAAGAAACTAT GGGGTTGGATTTTCCAGACACTTCAGAGGACATCAGGCAAGAGCAAGCTGCCACAGAGGTTCAGGCTGCTTTCAGGGGCTATTTGGCTCGCAGGTCATTT CATGTCCTCAAGGGTATCATAAGACTTCAAGCACTCTTTCGTGGACACTTGGTAAGGAGACAAGCTGTTGCTACTTTGCACTGCTTGCAAGGGATTGTTA AGTTGCAGGCTCTAATTCGGGGACGAGGGGTTAGAGTTCTGGATAATGGGCAGGAAGCACTCACAAAGGGAAGTCCAGGAAGGTTTCTGGATGATGCTAA GCAAGTTCATCCATTTGAATTAGATACAACAACCAGGCCTGAGAAGCTATATACAAATGCTTTTATCTGTAAGCTTCTAGCTTCATCATCCACTGCTATG CCCCTGAACCTCCATTATGATGTGGTCGAACAAAACTCAGCTTGGAACTGGCTAGAACGGTGGTCAAAATTCCTTTTCCAGGAATCATTTCCGCAGAAAA AGCGGGTTCTTGACACAAGGTCTAGTTTAAAGCAGCCCAGCACTCAAAGCATGCATAACGATGGCAGGCAGAAACGAGGTGTGTGGAGGATTCCTGCTGC CAATGCTGACAATAACTCATTGCGTTCTGTTACTGAGTTTGGAAAGCCTAAGAACAACATGAGAAAACCTTGGAGTAATCAAACAAAATCAGCACAGGAA AACCCTCCAAGTGAACTTGAGAGGGTAAGGAAAAGTTTGAGGAAAATCTCTGCATCCAGCCCAGGGGCTCCTGATGGCTCAGAAACCGTGACTGAAAAGC CAAAGCTAAGCCCAATAAAGGTGCCAGGATCTCCTACTCGTGATGTTCTCATGAATATCACAGATAATCCTTCGAATAAGACGAGTGATCCCATGGTTTC ATTGACAAAAGATATAGAAAAAGTTGAGACAGAAACTTCTCCTAAACCATTGACAACGAAGGAGACGGTTAGTTTGCAGAATGAGAAGCTGCCCAATGCT CAGTTTAATCATCTGGAAAGTAGTGCTGATAACATTCACGTGGTGGTTGAGGATATAAATTCCAAGGAGGAATGTAGCAAGGATAGTAAGACAACTAGGA GGAGAAGATCTTCAACAAAACAGGAATATCAAGAGAGTGTCTCACAGAACGCAACAACAGTTCCAAGCTATATGGCGGCAACTGAATCTGCAAAAGCAAA ACTTAGAGGACAAGGATCTCCAAGGATTGTTCAAGATGGGGTTGAATTTTTTTTGATCCGGACGCATTCTCTTCCAGCCAGCAAGGGTGGCGAATTGAAA TTAGTGTCACCCCAGACACAGAGGAAAGTTAATACAAACAACAAGGGCAGAAGCAGAGTTGACAGATTATTGTTTTCCACTAAAGATGGTAATGAGAAGG TGAGCCAGCCAGCATGGAAGAGGTAA
AA sequence Show only first row Show all	>Potri.017G079600.2 pacid=42812843 polypeptide=Potri.017G079600.2.p locus=Potri.017G079600 ID=Potri.017G079600.2.v4.1 annot-version=v4.1 MGKSAGNWIKTVIFRKKSYKSSFSNRAAVKEAFAISKGSTGDLTLSPPVISDPLSHVSDKNDTEETMGLDFPDTSEDIRQEQAATEVQAAFRGYLARRSF HVLKGIIRLQALFRGHLVRRQAVATLHCLQGIVKLQALIRGRGVRVLDNGQEALTKGSPGRFLDDAKQVHPFELDTTTRPEKLYTNAFICKLLASSSTAM PLNLHYDVVEQNSAWNWLERWSKFLFQESFPQKKRVLDTRSSLKQPSTQSMHNDGRQKRGVWRIPAANADNNSLRSVTEFGKPKNNMRKPWSNQTKSAQE NPPSELERVRKSLRKISASSPGAPDGSETVTEKPKLSPIKVPGSPTRDVLMNITDNPSNKTSDPMVSLTKDIEKVETETSPKPLTTKETVSLQNEKLPNA QFNHLESSADNIHVVVEDINSKEECSKDSKTTRRRRSSTKQEYQESVSQNATTVPSYMAATESAKAKLRGQGSPRIVQDGVEFFLIRTHSLPASKGGELK LVSPQTQRKVNTNNKGRSRVDRLLFSTKDGNEKVSQPAWKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.017G079600 [exp]	0	1
AT2G47010			unknown protein		Potri.019G076900 [exp]	3.16	0.9213
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	4.35	0.9322
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	5.47	0.9251
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	5.65	0.9172	ATK2.1
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	11.61	0.8943
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	11.74	0.9211
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252400 [exp]	12.16	0.9214
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	12.40	0.9105
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	13.22	0.9178
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	13.41	0.9147

Compare expression of checked genes

Potri.017G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.